Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_08390 and OLJFJH_08395 are separated by 26 nucleotides OLJFJH_08395 and OLJFJH_08400 are separated by 286 nucleotides OLJFJH_08400 and OLJFJH_08405 are separated by 550 nucleotides
OLJFJH_08390: OLJFJH_08390 - DUF4365 domain-containing protein, at 1,726,475 to 1,727,128
_08390
OLJFJH_08395: OLJFJH_08395 - tetratricopeptide repeat protein, at 1,727,155 to 1,727,556
_08395
OLJFJH_08400: OLJFJH_08400 - hypothetical protein, at 1,727,843 to 1,728,160
_08400
OLJFJH_08405: OLJFJH_08405 - hypothetical protein, at 1,728,711 to 1,729,094
_08405
Position (kb) 1727
1728
1729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1726.876 kb on - strand, within OLJFJH_08390 at 1726.940 kb on - strand, within OLJFJH_08390 at 1727.088 kb on - strand at 1727.350 kb on - strand, within OLJFJH_08395 at 1727.538 kb on + strand at 1727.735 kb on + strand at 1727.736 kb on - strand at 1727.969 kb on - strand, within OLJFJH_08400 at 1727.970 kb on + strand, within OLJFJH_08400 at 1728.053 kb on + strand, within OLJFJH_08400 at 1728.158 kb on + strand at 1728.463 kb on + strand at 1728.617 kb on + strand at 1728.623 kb on + strand at 1728.624 kb on - strand at 1728.624 kb on - strand at 1728.625 kb on + strand at 1728.713 kb on - strand at 1728.754 kb on + strand, within OLJFJH_08405 at 1728.836 kb on + strand, within OLJFJH_08405 at 1728.857 kb on - strand, within OLJFJH_08405 at 1729.079 kb on + strand at 1729.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7 remove 1,726,876 - OLJFJH_08390 0.61 -0.6 1,726,940 - OLJFJH_08390 0.71 -1.6 1,727,088 - -0.1 1,727,350 - OLJFJH_08395 0.49 -0.9 1,727,538 + -1.3 1,727,735 + -1.3 1,727,736 - -0.6 1,727,969 - OLJFJH_08400 0.40 -0.4 1,727,970 + OLJFJH_08400 0.40 -0.8 1,728,053 + OLJFJH_08400 0.66 -1.7 1,728,158 + +0.1 1,728,463 + +0.1 1,728,617 + -0.2 1,728,623 + +0.4 1,728,624 - +1.8 1,728,624 - -1.8 1,728,625 + -0.6 1,728,713 - -1.6 1,728,754 + OLJFJH_08405 0.11 -0.1 1,728,836 + OLJFJH_08405 0.33 +0.1 1,728,857 - OLJFJH_08405 0.38 +0.6 1,729,079 + -0.1 1,729,126 + +1.7
Or see this region's nucleotide sequence