Strain Fitness in Erwinia amylovora T8 around OLJFJH_06470

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06465 and OLJFJH_06470 are separated by 385 nucleotidesOLJFJH_06470 and OLJFJH_06475 are separated by 103 nucleotides OLJFJH_06465: OLJFJH_06465 - glycerol-3-phosphate transporter, at 1,308,101 to 1,309,432 _06465 OLJFJH_06470: OLJFJH_06470 - Uncharacterized protein yehS, at 1,309,818 to 1,310,288 _06470 OLJFJH_06475: OLJFJH_06475 - HTH-type transcriptional regulator MetR, at 1,310,392 to 1,311,330 _06475 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1308.864 kb on + strand, within OLJFJH_06465at 1308.864 kb on + strand, within OLJFJH_06465at 1308.864 kb on + strand, within OLJFJH_06465at 1308.864 kb on + strand, within OLJFJH_06465at 1308.865 kb on - strand, within OLJFJH_06465at 1308.865 kb on - strand, within OLJFJH_06465at 1308.865 kb on - strand, within OLJFJH_06465at 1308.865 kb on - strand, within OLJFJH_06465at 1308.865 kb on - strand, within OLJFJH_06465at 1308.941 kb on - strand, within OLJFJH_06465at 1309.003 kb on + strand, within OLJFJH_06465at 1309.003 kb on + strand, within OLJFJH_06465at 1309.004 kb on - strand, within OLJFJH_06465at 1309.199 kb on - strand, within OLJFJH_06465at 1309.315 kb on - strandat 1309.427 kb on - strandat 1309.456 kb on + strandat 1309.598 kb on - strandat 1309.789 kb on + strandat 1309.790 kb on - strandat 1309.894 kb on + strand, within OLJFJH_06470at 1310.114 kb on - strand, within OLJFJH_06470at 1310.223 kb on + strand, within OLJFJH_06470at 1310.224 kb on - strand, within OLJFJH_06470at 1310.241 kb on + strand, within OLJFJH_06470at 1310.254 kb on + strandat 1310.255 kb on - strandat 1310.255 kb on - strandat 1310.330 kb on - strandat 1310.402 kb on + strandat 1310.402 kb on + strandat 1310.403 kb on - strandat 1310.403 kb on - strandat 1310.452 kb on + strandat 1310.452 kb on + strandat 1310.453 kb on - strandat 1310.670 kb on + strand, within OLJFJH_06475at 1310.671 kb on - strand, within OLJFJH_06475at 1310.671 kb on - strand, within OLJFJH_06475at 1310.671 kb on - strand, within OLJFJH_06475at 1310.671 kb on - strand, within OLJFJH_06475at 1310.730 kb on + strand, within OLJFJH_06475at 1310.797 kb on - strand, within OLJFJH_06475at 1310.842 kb on + strand, within OLJFJH_06475at 1310.843 kb on - strand, within OLJFJH_06475at 1310.867 kb on + strand, within OLJFJH_06475at 1311.116 kb on - strand, within OLJFJH_06475at 1311.285 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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1,308,864 + OLJFJH_06465 0.57 -0.3
1,308,864 + OLJFJH_06465 0.57 +0.6
1,308,864 + OLJFJH_06465 0.57 +0.7
1,308,864 + OLJFJH_06465 0.57 +0.1
1,308,865 - OLJFJH_06465 0.57 +0.2
1,308,865 - OLJFJH_06465 0.57 -1.0
1,308,865 - OLJFJH_06465 0.57 -0.4
1,308,865 - OLJFJH_06465 0.57 -1.3
1,308,865 - OLJFJH_06465 0.57 -1.6
1,308,941 - OLJFJH_06465 0.63 -1.0
1,309,003 + OLJFJH_06465 0.68 -1.0
1,309,003 + OLJFJH_06465 0.68 -0.7
1,309,004 - OLJFJH_06465 0.68 -0.9
1,309,199 - OLJFJH_06465 0.82 -1.7
1,309,315 - +0.6
1,309,427 - +0.8
1,309,456 + -0.1
1,309,598 - +0.9
1,309,789 + +0.6
1,309,790 - -0.4
1,309,894 + OLJFJH_06470 0.16 -0.1
1,310,114 - OLJFJH_06470 0.63 -1.0
1,310,223 + OLJFJH_06470 0.86 +0.2
1,310,224 - OLJFJH_06470 0.86 -0.4
1,310,241 + OLJFJH_06470 0.90 -1.1
1,310,254 + -1.7
1,310,255 - -0.1
1,310,255 - -0.8
1,310,330 - -0.2
1,310,402 + +0.4
1,310,402 + +0.5
1,310,403 - +0.4
1,310,403 - +0.3
1,310,452 + -1.5
1,310,452 + -4.7
1,310,453 - -0.2
1,310,670 + OLJFJH_06475 0.30 -2.5
1,310,671 - OLJFJH_06475 0.30 -0.4
1,310,671 - OLJFJH_06475 0.30 -3.4
1,310,671 - OLJFJH_06475 0.30 -0.8
1,310,671 - OLJFJH_06475 0.30 -3.5
1,310,730 + OLJFJH_06475 0.36 -2.5
1,310,797 - OLJFJH_06475 0.43 -2.6
1,310,842 + OLJFJH_06475 0.48 -1.3
1,310,843 - OLJFJH_06475 0.48 -1.9
1,310,867 + OLJFJH_06475 0.51 -2.1
1,311,116 - OLJFJH_06475 0.77 -2.1
1,311,285 + -2.6

Or see this region's nucleotide sequence