Strain Fitness in Erwinia amylovora T8 around OLJFJH_05630
Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Matrix:pear;Phage:PBS;Temp:28;Samp:16-7 |
|---|---|---|---|---|---|
| remove | |||||
| 1,145,868 | - | OLJFJH_05625 | 0.15 | -1.1 | |
| 1,145,868 | - | OLJFJH_05625 | 0.15 | +1.4 | |
| 1,145,869 | + | OLJFJH_05625 | 0.15 | +0.9 | |
| 1,145,870 | - | OLJFJH_05625 | 0.15 | -0.5 | |
| 1,145,988 | + | OLJFJH_05625 | 0.29 | +0.8 | |
| 1,145,989 | - | OLJFJH_05625 | 0.29 | -0.5 | |
| 1,146,031 | + | OLJFJH_05625 | 0.34 | +0.8 | |
| 1,146,032 | - | OLJFJH_05625 | 0.34 | +0.1 | |
| 1,146,146 | + | OLJFJH_05625 | 0.47 | -1.1 | |
| 1,146,146 | + | OLJFJH_05625 | 0.47 | +5.3 | |
| 1,146,147 | - | OLJFJH_05625 | 0.47 | -1.0 | |
| 1,146,149 | - | OLJFJH_05625 | 0.47 | +0.8 | |
| 1,146,239 | - | OLJFJH_05625 | 0.57 | -0.4 | |
| 1,146,515 | + | OLJFJH_05625 | 0.88 | +0.2 | |
| 1,146,515 | + | OLJFJH_05625 | 0.88 | +0.6 | |
| 1,146,740 | - | -1.8 | |||
| 1,147,031 | + | OLJFJH_05630 | 0.29 | -2.5 | |
| 1,147,311 | - | OLJFJH_05630 | 0.69 | -1.5 | |
| 1,147,707 | - | OLJFJH_05635 | 0.13 | -1.7 | |
| 1,147,780 | + | OLJFJH_05635 | 0.20 | -2.3 | |
| 1,147,983 | + | OLJFJH_05635 | 0.38 | -0.3 | |
| 1,148,221 | + | OLJFJH_05635 | 0.59 | -2.7 |
Or see this region's nucleotide sequence