Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04300 and OLJFJH_04305 are separated by 159 nucleotides OLJFJH_04305 and OLJFJH_04310 are separated by 72 nucleotides OLJFJH_04310 and OLJFJH_04315 overlap by 4 nucleotides
OLJFJH_04300: OLJFJH_04300 - gamma-glutamyltransferase, at 828,267 to 830,018
_04300
OLJFJH_04305: OLJFJH_04305 - DUF2756 domain-containing protein, at 830,178 to 830,465
_04305
OLJFJH_04310: OLJFJH_04310 - glycerophosphodiester phosphodiesterase, at 830,538 to 831,278
_04310
OLJFJH_04315: OLJFJH_04315 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 831,275 to 832,348
_04315
Position (kb) 830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 829.640 kb on + strand, within OLJFJH_04300 at 829.640 kb on + strand, within OLJFJH_04300 at 829.640 kb on + strand, within OLJFJH_04300 at 829.640 kb on + strand, within OLJFJH_04300 at 829.692 kb on - strand, within OLJFJH_04300 at 829.718 kb on + strand, within OLJFJH_04300 at 829.718 kb on + strand, within OLJFJH_04300 at 829.929 kb on - strand at 830.034 kb on - strand at 830.046 kb on - strand at 830.070 kb on + strand at 830.071 kb on - strand at 830.077 kb on - strand at 830.144 kb on + strand at 830.145 kb on - strand at 830.156 kb on + strand at 830.381 kb on + strand, within OLJFJH_04305 at 830.556 kb on + strand at 830.557 kb on - strand at 830.567 kb on + strand at 830.567 kb on + strand at 830.567 kb on + strand at 830.627 kb on + strand, within OLJFJH_04310 at 830.720 kb on + strand, within OLJFJH_04310 at 830.720 kb on + strand, within OLJFJH_04310 at 831.210 kb on - strand at 831.448 kb on + strand, within OLJFJH_04315 at 831.449 kb on - strand, within OLJFJH_04315 at 831.497 kb on - strand, within OLJFJH_04315 at 831.570 kb on - strand, within OLJFJH_04315 at 831.570 kb on - strand, within OLJFJH_04315 at 831.586 kb on + strand, within OLJFJH_04315 at 831.646 kb on + strand, within OLJFJH_04315 at 831.681 kb on + strand, within OLJFJH_04315 at 831.682 kb on - strand, within OLJFJH_04315 at 831.722 kb on - strand, within OLJFJH_04315 at 831.781 kb on - strand, within OLJFJH_04315 at 831.781 kb on - strand, within OLJFJH_04315 at 831.781 kb on - strand, within OLJFJH_04315 at 832.078 kb on + strand, within OLJFJH_04315 at 832.079 kb on - strand, within OLJFJH_04315 at 832.222 kb on + strand, within OLJFJH_04315 at 832.223 kb on - strand, within OLJFJH_04315 at 832.223 kb on - strand, within OLJFJH_04315 at 832.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7 remove 829,640 + OLJFJH_04300 0.78 -0.4 829,640 + OLJFJH_04300 0.78 +0.0 829,640 + OLJFJH_04300 0.78 -0.3 829,640 + OLJFJH_04300 0.78 -0.2 829,692 - OLJFJH_04300 0.81 -0.3 829,718 + OLJFJH_04300 0.83 -1.3 829,718 + OLJFJH_04300 0.83 +1.8 829,929 - +0.4 830,034 - -0.7 830,046 - +0.2 830,070 + +0.5 830,071 - -0.7 830,077 - -0.2 830,144 + -0.5 830,145 - +0.4 830,156 + +0.3 830,381 + OLJFJH_04305 0.70 +1.1 830,556 + +0.0 830,557 - -1.9 830,567 + +0.5 830,567 + -0.9 830,567 + -1.9 830,627 + OLJFJH_04310 0.12 -0.6 830,720 + OLJFJH_04310 0.25 -2.5 830,720 + OLJFJH_04310 0.25 -3.2 831,210 - -1.4 831,448 + OLJFJH_04315 0.16 -1.8 831,449 - OLJFJH_04315 0.16 +0.5 831,497 - OLJFJH_04315 0.21 +1.0 831,570 - OLJFJH_04315 0.27 +0.4 831,570 - OLJFJH_04315 0.27 -0.3 831,586 + OLJFJH_04315 0.29 +1.5 831,646 + OLJFJH_04315 0.35 +0.0 831,681 + OLJFJH_04315 0.38 +0.1 831,682 - OLJFJH_04315 0.38 -1.1 831,722 - OLJFJH_04315 0.42 +0.2 831,781 - OLJFJH_04315 0.47 +1.2 831,781 - OLJFJH_04315 0.47 +0.6 831,781 - OLJFJH_04315 0.47 +0.7 832,078 + OLJFJH_04315 0.75 -0.9 832,079 - OLJFJH_04315 0.75 -2.1 832,222 + OLJFJH_04315 0.88 -0.3 832,223 - OLJFJH_04315 0.88 +0.7 832,223 - OLJFJH_04315 0.88 -0.9 832,252 + -0.6
Or see this region's nucleotide sequence