Strain Fitness in Erwinia amylovora T8 around OLJFJH_02410

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02400 and OLJFJH_02405 are separated by 47 nucleotidesOLJFJH_02405 and OLJFJH_02410 are separated by 536 nucleotidesOLJFJH_02410 and OLJFJH_02415 are separated by 238 nucleotides OLJFJH_02400: OLJFJH_02400 - Polyamine export protein, at 429,129 to 430,457 _02400 OLJFJH_02405: OLJFJH_02405 - DUF1107 domain-containing protein, at 430,505 to 430,711 _02405 OLJFJH_02410: OLJFJH_02410 - 3'(2') 5'-bisphosphate nucleotidase CysQ, at 431,248 to 431,988 _02410 OLJFJH_02415: OLJFJH_02415 - bifunctional 2' 3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 432,227 to 434,161 _02415 Position (kb) 431 432Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 430.263 kb on + strand, within OLJFJH_02400at 430.264 kb on - strand, within OLJFJH_02400at 430.264 kb on - strand, within OLJFJH_02400at 430.264 kb on - strand, within OLJFJH_02400at 430.283 kb on + strand, within OLJFJH_02400at 430.292 kb on + strand, within OLJFJH_02400at 430.292 kb on + strand, within OLJFJH_02400at 430.293 kb on - strand, within OLJFJH_02400at 430.293 kb on - strand, within OLJFJH_02400at 430.293 kb on - strand, within OLJFJH_02400at 430.434 kb on - strandat 430.455 kb on + strandat 430.638 kb on + strand, within OLJFJH_02405at 430.639 kb on - strand, within OLJFJH_02405at 430.639 kb on - strand, within OLJFJH_02405at 430.639 kb on - strand, within OLJFJH_02405at 430.668 kb on + strand, within OLJFJH_02405at 430.668 kb on + strand, within OLJFJH_02405at 430.672 kb on + strand, within OLJFJH_02405at 430.690 kb on + strand, within OLJFJH_02405at 430.691 kb on - strandat 430.693 kb on - strandat 430.712 kb on + strandat 430.712 kb on + strandat 430.713 kb on - strandat 430.713 kb on - strandat 430.717 kb on + strandat 430.717 kb on + strandat 430.718 kb on - strandat 430.718 kb on - strandat 430.737 kb on + strandat 430.737 kb on + strandat 430.738 kb on - strandat 430.794 kb on - strandat 430.795 kb on + strandat 430.795 kb on + strandat 430.796 kb on - strandat 430.893 kb on + strandat 430.896 kb on - strandat 430.896 kb on - strandat 430.977 kb on + strandat 431.122 kb on + strandat 431.123 kb on - strandat 431.123 kb on - strandat 431.123 kb on - strandat 431.175 kb on - strandat 431.179 kb on - strandat 431.179 kb on - strandat 431.382 kb on + strand, within OLJFJH_02410at 431.386 kb on - strand, within OLJFJH_02410at 431.492 kb on + strand, within OLJFJH_02410at 431.569 kb on + strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.618 kb on + strand, within OLJFJH_02410at 431.619 kb on - strand, within OLJFJH_02410at 431.619 kb on - strand, within OLJFJH_02410at 431.643 kb on - strand, within OLJFJH_02410at 431.685 kb on + strand, within OLJFJH_02410at 431.833 kb on + strand, within OLJFJH_02410at 431.834 kb on - strand, within OLJFJH_02410at 431.930 kb on + strandat 431.930 kb on + strandat 431.931 kb on - strandat 431.931 kb on - strandat 432.054 kb on - strandat 432.177 kb on - strandat 432.224 kb on + strandat 432.224 kb on + strandat 432.224 kb on + strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.331 kb on + strandat 432.332 kb on - strandat 432.332 kb on - strandat 432.332 kb on - strandat 432.347 kb on + strandat 432.348 kb on - strandat 432.350 kb on + strandat 432.351 kb on - strandat 432.370 kb on + strandat 432.374 kb on + strandat 432.374 kb on + strandat 432.375 kb on - strandat 432.375 kb on - strandat 432.375 kb on - strandat 432.375 kb on - strandat 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.484 kb on + strand, within OLJFJH_02415at 432.484 kb on + strand, within OLJFJH_02415at 432.485 kb on - strand, within OLJFJH_02415at 432.485 kb on - strand, within OLJFJH_02415at 432.529 kb on + strand, within OLJFJH_02415at 432.552 kb on - strand, within OLJFJH_02415at 432.584 kb on - strand, within OLJFJH_02415at 432.600 kb on - strand, within OLJFJH_02415at 432.635 kb on + strand, within OLJFJH_02415at 432.636 kb on - strand, within OLJFJH_02415at 432.636 kb on - strand, within OLJFJH_02415at 432.637 kb on + strand, within OLJFJH_02415at 432.638 kb on - strand, within OLJFJH_02415at 432.698 kb on - strand, within OLJFJH_02415at 432.752 kb on + strand, within OLJFJH_02415at 432.755 kb on - strand, within OLJFJH_02415at 432.778 kb on + strand, within OLJFJH_02415at 432.827 kb on - strand, within OLJFJH_02415at 432.985 kb on - strand, within OLJFJH_02415

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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430,263 + OLJFJH_02400 0.85 -0.2
430,264 - OLJFJH_02400 0.85 -0.8
430,264 - OLJFJH_02400 0.85 +0.3
430,264 - OLJFJH_02400 0.85 -0.8
430,283 + OLJFJH_02400 0.87 +0.3
430,292 + OLJFJH_02400 0.88 +0.8
430,292 + OLJFJH_02400 0.88 -0.6
430,293 - OLJFJH_02400 0.88 -0.8
430,293 - OLJFJH_02400 0.88 -0.8
430,293 - OLJFJH_02400 0.88 -1.5
430,434 - -1.2
430,455 + +2.3
430,638 + OLJFJH_02405 0.64 +0.6
430,639 - OLJFJH_02405 0.65 +0.1
430,639 - OLJFJH_02405 0.65 -0.5
430,639 - OLJFJH_02405 0.65 +1.2
430,668 + OLJFJH_02405 0.79 -1.0
430,668 + OLJFJH_02405 0.79 +0.0
430,672 + OLJFJH_02405 0.81 +0.7
430,690 + OLJFJH_02405 0.89 -0.7
430,691 - -1.1
430,693 - +0.4
430,712 + +1.4
430,712 + +0.2
430,713 - +0.1
430,713 - +1.9
430,717 + +2.5
430,717 + +3.1
430,718 - +0.0
430,718 - +3.6
430,737 + +2.8
430,737 + -0.3
430,738 - -0.3
430,794 - -0.2
430,795 + -0.1
430,795 + -0.4
430,796 - +1.1
430,893 + +0.1
430,896 - -0.6
430,896 - -1.5
430,977 + -0.7
431,122 + -0.6
431,123 - -0.9
431,123 - +1.6
431,123 - -0.9
431,175 - +0.2
431,179 - -1.1
431,179 - -0.4
431,382 + OLJFJH_02410 0.18 -0.9
431,386 - OLJFJH_02410 0.19 -2.1
431,492 + OLJFJH_02410 0.33 -3.1
431,569 + OLJFJH_02410 0.43 -1.2
431,570 - OLJFJH_02410 0.43 -3.9
431,570 - OLJFJH_02410 0.43 +1.4
431,570 - OLJFJH_02410 0.43 -1.6
431,570 - OLJFJH_02410 0.43 -2.7
431,618 + OLJFJH_02410 0.50 -1.7
431,619 - OLJFJH_02410 0.50 -2.9
431,619 - OLJFJH_02410 0.50 -0.2
431,643 - OLJFJH_02410 0.53 -0.6
431,685 + OLJFJH_02410 0.59 -2.7
431,833 + OLJFJH_02410 0.79 -3.0
431,834 - OLJFJH_02410 0.79 -2.8
431,930 + -1.5
431,930 + +0.1
431,931 - -0.8
431,931 - -1.3
432,054 - +0.1
432,177 - -1.3
432,224 + +1.1
432,224 + -0.1
432,224 + -0.0
432,225 - +1.5
432,225 - +0.3
432,225 - -0.5
432,225 - +0.1
432,225 - -0.4
432,331 + -0.3
432,332 - -0.9
432,332 - +0.7
432,332 - -1.2
432,347 + -0.5
432,348 - -1.1
432,350 + +0.8
432,351 - +3.7
432,370 + +1.4
432,374 + +0.1
432,374 + -0.2
432,375 - +3.1
432,375 - -0.3
432,375 - -0.4
432,375 - +0.4
432,482 + OLJFJH_02415 0.13 -0.1
432,482 + OLJFJH_02415 0.13 +0.1
432,482 + OLJFJH_02415 0.13 -1.4
432,482 + OLJFJH_02415 0.13 +0.6
432,482 + OLJFJH_02415 0.13 -1.2
432,482 + OLJFJH_02415 0.13 -0.8
432,483 - OLJFJH_02415 0.13 -2.4
432,483 - OLJFJH_02415 0.13 -0.3
432,483 - OLJFJH_02415 0.13 -1.0
432,483 - OLJFJH_02415 0.13 +1.2
432,483 - OLJFJH_02415 0.13 -0.4
432,484 + OLJFJH_02415 0.13 +0.5
432,484 + OLJFJH_02415 0.13 -1.0
432,485 - OLJFJH_02415 0.13 +0.7
432,485 - OLJFJH_02415 0.13 +1.0
432,529 + OLJFJH_02415 0.16 -0.2
432,552 - OLJFJH_02415 0.17 +0.5
432,584 - OLJFJH_02415 0.18 -0.7
432,600 - OLJFJH_02415 0.19 -0.0
432,635 + OLJFJH_02415 0.21 +0.3
432,636 - OLJFJH_02415 0.21 +0.1
432,636 - OLJFJH_02415 0.21 +0.7
432,637 + OLJFJH_02415 0.21 +0.2
432,638 - OLJFJH_02415 0.21 -0.6
432,698 - OLJFJH_02415 0.24 -0.6
432,752 + OLJFJH_02415 0.27 +0.4
432,755 - OLJFJH_02415 0.27 +1.2
432,778 + OLJFJH_02415 0.28 -4.2
432,827 - OLJFJH_02415 0.31 -1.4
432,985 - OLJFJH_02415 0.39 +0.9

Or see this region's nucleotide sequence