Strain Fitness in Erwinia amylovora T8 around OLJFJH_02335

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02325 and OLJFJH_02330 are separated by 13 nucleotidesOLJFJH_02330 and OLJFJH_02335 are separated by 34 nucleotidesOLJFJH_02335 and OLJFJH_02340 overlap by 1 nucleotidesOLJFJH_02340 and OLJFJH_02345 are separated by 15 nucleotides OLJFJH_02325: OLJFJH_02325 - DUF4310 domain-containing protein, at 411,535 to 412,179 _02325 OLJFJH_02330: OLJFJH_02330 - DUF4311 domain-containing protein, at 412,193 to 412,969 _02330 OLJFJH_02335: OLJFJH_02335 - cytoplasmic protein, at 413,004 to 413,303 _02335 OLJFJH_02340: OLJFJH_02340 - Glycine-rich SFCGS, at 413,303 to 413,662 _02340 OLJFJH_02345: OLJFJH_02345 - glycine dehydrogenase, at 413,678 to 414,016 _02345 Position (kb) 413 414Strain fitness (log2 ratio) -2 -1 0 1at 412.031 kb on - strand, within OLJFJH_02325at 412.056 kb on + strand, within OLJFJH_02325at 412.056 kb on + strand, within OLJFJH_02325at 412.056 kb on + strand, within OLJFJH_02325at 412.074 kb on - strand, within OLJFJH_02325at 412.079 kb on + strand, within OLJFJH_02325at 412.079 kb on + strand, within OLJFJH_02325at 412.079 kb on + strand, within OLJFJH_02325at 412.079 kb on + strand, within OLJFJH_02325at 412.082 kb on + strand, within OLJFJH_02325at 412.082 kb on + strand, within OLJFJH_02325at 412.082 kb on + strand, within OLJFJH_02325at 412.083 kb on - strand, within OLJFJH_02325at 412.083 kb on - strand, within OLJFJH_02325at 412.083 kb on - strand, within OLJFJH_02325at 412.083 kb on - strand, within OLJFJH_02325at 412.083 kb on - strand, within OLJFJH_02325at 412.083 kb on - strand, within OLJFJH_02325at 412.194 kb on + strandat 412.194 kb on + strandat 412.194 kb on + strandat 412.194 kb on + strandat 412.194 kb on + strandat 412.195 kb on - strandat 412.195 kb on - strandat 412.195 kb on - strandat 412.195 kb on - strandat 412.195 kb on - strandat 412.195 kb on - strandat 412.196 kb on + strandat 412.196 kb on + strandat 412.196 kb on + strandat 412.313 kb on - strand, within OLJFJH_02330at 412.315 kb on + strand, within OLJFJH_02330at 412.316 kb on - strand, within OLJFJH_02330at 412.316 kb on - strand, within OLJFJH_02330at 412.316 kb on - strand, within OLJFJH_02330at 412.316 kb on - strand, within OLJFJH_02330at 412.525 kb on + strand, within OLJFJH_02330at 412.526 kb on - strand, within OLJFJH_02330at 412.595 kb on - strand, within OLJFJH_02330at 412.952 kb on + strandat 413.175 kb on - strand, within OLJFJH_02335at 413.253 kb on - strand, within OLJFJH_02335at 413.446 kb on - strand, within OLJFJH_02340at 413.446 kb on - strand, within OLJFJH_02340at 413.446 kb on - strand, within OLJFJH_02340at 413.446 kb on - strand, within OLJFJH_02340at 413.451 kb on + strand, within OLJFJH_02340at 413.451 kb on + strand, within OLJFJH_02340at 413.452 kb on - strand, within OLJFJH_02340at 413.452 kb on - strand, within OLJFJH_02340at 413.548 kb on + strand, within OLJFJH_02340at 413.548 kb on + strand, within OLJFJH_02340at 413.548 kb on + strand, within OLJFJH_02340at 413.549 kb on - strand, within OLJFJH_02340at 413.549 kb on - strand, within OLJFJH_02340at 413.662 kb on + strandat 413.662 kb on + strandat 413.663 kb on - strandat 413.680 kb on - strandat 413.905 kb on + strand, within OLJFJH_02345at 414.005 kb on + strandat 414.050 kb on - strandat 414.071 kb on - strandat 414.072 kb on + strandat 414.073 kb on - strandat 414.073 kb on - strandat 414.188 kb on + strandat 414.188 kb on + strandat 414.189 kb on - strandat 414.219 kb on - strandat 414.258 kb on + strandat 414.260 kb on + strandat 414.260 kb on + strandat 414.289 kb on - strandat 414.299 kb on + strandat 414.300 kb on - strandat 414.300 kb on - strandat 414.301 kb on + strandat 414.301 kb on + strandat 414.302 kb on - strandat 414.302 kb on - strandat 414.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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412,031 - OLJFJH_02325 0.77 +0.4
412,056 + OLJFJH_02325 0.81 -0.8
412,056 + OLJFJH_02325 0.81 +1.7
412,056 + OLJFJH_02325 0.81 +0.1
412,074 - OLJFJH_02325 0.84 +0.7
412,079 + OLJFJH_02325 0.84 -0.3
412,079 + OLJFJH_02325 0.84 +1.0
412,079 + OLJFJH_02325 0.84 +0.9
412,079 + OLJFJH_02325 0.84 +1.2
412,082 + OLJFJH_02325 0.85 -1.0
412,082 + OLJFJH_02325 0.85 -0.3
412,082 + OLJFJH_02325 0.85 +0.3
412,083 - OLJFJH_02325 0.85 +0.3
412,083 - OLJFJH_02325 0.85 +0.9
412,083 - OLJFJH_02325 0.85 -1.1
412,083 - OLJFJH_02325 0.85 -0.3
412,083 - OLJFJH_02325 0.85 +0.2
412,083 - OLJFJH_02325 0.85 +0.9
412,194 + -0.1
412,194 + +0.3
412,194 + -0.5
412,194 + -1.0
412,194 + -0.4
412,195 - -0.0
412,195 - -2.5
412,195 - -0.8
412,195 - +0.7
412,195 - -0.5
412,195 - +0.8
412,196 + -1.5
412,196 + +1.0
412,196 + -0.5
412,313 - OLJFJH_02330 0.15 +0.1
412,315 + OLJFJH_02330 0.16 -1.3
412,316 - OLJFJH_02330 0.16 -0.5
412,316 - OLJFJH_02330 0.16 -1.8
412,316 - OLJFJH_02330 0.16 +0.6
412,316 - OLJFJH_02330 0.16 -0.3
412,525 + OLJFJH_02330 0.43 +0.3
412,526 - OLJFJH_02330 0.43 +1.0
412,595 - OLJFJH_02330 0.52 -0.4
412,952 + +0.6
413,175 - OLJFJH_02335 0.57 -1.0
413,253 - OLJFJH_02335 0.83 -1.1
413,446 - OLJFJH_02340 0.40 +1.7
413,446 - OLJFJH_02340 0.40 -0.9
413,446 - OLJFJH_02340 0.40 -2.4
413,446 - OLJFJH_02340 0.40 -2.0
413,451 + OLJFJH_02340 0.41 -2.7
413,451 + OLJFJH_02340 0.41 -0.2
413,452 - OLJFJH_02340 0.41 +0.5
413,452 - OLJFJH_02340 0.41 -0.5
413,548 + OLJFJH_02340 0.68 -0.6
413,548 + OLJFJH_02340 0.68 -0.2
413,548 + OLJFJH_02340 0.68 -0.0
413,549 - OLJFJH_02340 0.68 -2.2
413,549 - OLJFJH_02340 0.68 +0.1
413,662 + +0.8
413,662 + +0.1
413,663 - -0.8
413,680 - +1.1
413,905 + OLJFJH_02345 0.67 -1.5
414,005 + -0.4
414,050 - -0.9
414,071 - +0.1
414,072 + -0.3
414,073 - -1.6
414,073 - -0.4
414,188 + +0.9
414,188 + -0.2
414,189 - -0.1
414,219 - +0.2
414,258 + -0.9
414,260 + -0.1
414,260 + -2.2
414,289 - -1.4
414,299 + +1.1
414,300 - +0.5
414,300 - -1.8
414,301 + +1.5
414,301 + +0.1
414,302 - -0.8
414,302 - +1.3
414,302 - +0.6

Or see this region's nucleotide sequence