Strain Fitness in Erwinia amylovora T8 around OLJFJH_02300

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02290 and OLJFJH_02295 are separated by 30 nucleotidesOLJFJH_02295 and OLJFJH_02300 are separated by 10 nucleotidesOLJFJH_02300 and OLJFJH_02305 are separated by 36 nucleotides OLJFJH_02285: OLJFJH_02285 - penicillin-binding protein activator, at 402,853 to 404,877 _02285 OLJFJH_02290: OLJFJH_02290 - YraN family protein, at 404,835 to 405,227 _02290 OLJFJH_02295: OLJFJH_02295 - DnaA initiator-associating protein DiaA, at 405,258 to 405,848 _02295 OLJFJH_02300: OLJFJH_02300 - division/outer membrane stress-associated lipid-binding lipoprotein, at 405,859 to 406,431 _02300 OLJFJH_02305: OLJFJH_02305 - transcription antiterminator BglG, at 406,468 to 408,405 _02305 Position (kb) 405 406 407Strain fitness (log2 ratio) -2 -1 0 1 2 3at 405.028 kb on + strand, within OLJFJH_02290at 405.028 kb on + strand, within OLJFJH_02290at 405.028 kb on + strand, within OLJFJH_02290at 405.029 kb on - strand, within OLJFJH_02290at 405.029 kb on - strand, within OLJFJH_02290at 405.237 kb on + strandat 405.238 kb on - strandat 405.293 kb on + strandat 405.294 kb on - strandat 405.444 kb on - strand, within OLJFJH_02295at 405.528 kb on - strand, within OLJFJH_02295at 405.552 kb on + strand, within OLJFJH_02295at 405.552 kb on + strand, within OLJFJH_02295at 405.553 kb on - strand, within OLJFJH_02295at 405.553 kb on - strand, within OLJFJH_02295at 405.644 kb on - strand, within OLJFJH_02295at 405.783 kb on - strand, within OLJFJH_02295at 405.783 kb on - strand, within OLJFJH_02295at 405.811 kb on + strandat 405.819 kb on - strandat 405.869 kb on + strandat 405.873 kb on + strandat 405.873 kb on + strandat 405.873 kb on + strandat 405.873 kb on + strandat 405.873 kb on + strandat 405.874 kb on - strandat 405.874 kb on - strandat 405.874 kb on - strandat 405.906 kb on - strandat 406.032 kb on + strand, within OLJFJH_02300at 406.033 kb on - strand, within OLJFJH_02300at 406.056 kb on + strand, within OLJFJH_02300at 406.057 kb on - strand, within OLJFJH_02300at 406.177 kb on + strand, within OLJFJH_02300at 406.177 kb on + strand, within OLJFJH_02300at 406.178 kb on - strand, within OLJFJH_02300at 406.200 kb on + strand, within OLJFJH_02300at 406.200 kb on + strand, within OLJFJH_02300at 406.201 kb on - strand, within OLJFJH_02300at 406.416 kb on + strandat 406.425 kb on + strandat 406.425 kb on + strandat 406.426 kb on - strandat 406.426 kb on - strandat 406.426 kb on - strandat 406.426 kb on - strandat 406.430 kb on - strandat 406.504 kb on + strandat 406.623 kb on - strandat 406.705 kb on - strand, within OLJFJH_02305at 406.706 kb on + strand, within OLJFJH_02305at 406.706 kb on + strand, within OLJFJH_02305at 406.808 kb on + strand, within OLJFJH_02305at 406.809 kb on - strand, within OLJFJH_02305at 406.815 kb on + strand, within OLJFJH_02305at 406.816 kb on - strand, within OLJFJH_02305at 406.816 kb on - strand, within OLJFJH_02305at 406.932 kb on + strand, within OLJFJH_02305at 406.932 kb on + strand, within OLJFJH_02305at 406.933 kb on - strand, within OLJFJH_02305at 406.933 kb on - strand, within OLJFJH_02305at 406.933 kb on - strand, within OLJFJH_02305at 406.933 kb on - strand, within OLJFJH_02305at 406.933 kb on - strand, within OLJFJH_02305at 406.933 kb on - strand, within OLJFJH_02305at 406.934 kb on + strand, within OLJFJH_02305at 406.934 kb on + strand, within OLJFJH_02305at 406.934 kb on + strand, within OLJFJH_02305at 406.934 kb on + strand, within OLJFJH_02305at 406.935 kb on - strand, within OLJFJH_02305at 406.935 kb on - strand, within OLJFJH_02305at 407.009 kb on - strand, within OLJFJH_02305at 407.012 kb on - strand, within OLJFJH_02305at 407.103 kb on + strand, within OLJFJH_02305at 407.104 kb on - strand, within OLJFJH_02305at 407.104 kb on - strand, within OLJFJH_02305at 407.113 kb on + strand, within OLJFJH_02305at 407.114 kb on - strand, within OLJFJH_02305at 407.222 kb on + strand, within OLJFJH_02305at 407.222 kb on + strand, within OLJFJH_02305at 407.222 kb on + strand, within OLJFJH_02305at 407.222 kb on + strand, within OLJFJH_02305at 407.222 kb on + strand, within OLJFJH_02305at 407.223 kb on - strand, within OLJFJH_02305at 407.289 kb on + strand, within OLJFJH_02305at 407.289 kb on + strand, within OLJFJH_02305at 407.290 kb on - strand, within OLJFJH_02305at 407.290 kb on - strand, within OLJFJH_02305at 407.292 kb on - strand, within OLJFJH_02305at 407.292 kb on - strand, within OLJFJH_02305at 407.301 kb on - strand, within OLJFJH_02305at 407.304 kb on + strand, within OLJFJH_02305at 407.332 kb on + strand, within OLJFJH_02305at 407.332 kb on + strand, within OLJFJH_02305at 407.333 kb on - strand, within OLJFJH_02305at 407.388 kb on + strand, within OLJFJH_02305at 407.388 kb on + strand, within OLJFJH_02305at 407.388 kb on + strand, within OLJFJH_02305at 407.388 kb on + strand, within OLJFJH_02305at 407.389 kb on - strand, within OLJFJH_02305at 407.389 kb on - strand, within OLJFJH_02305at 407.389 kb on - strand, within OLJFJH_02305at 407.392 kb on + strand, within OLJFJH_02305at 407.392 kb on + strand, within OLJFJH_02305at 407.392 kb on + strand, within OLJFJH_02305at 407.393 kb on - strand, within OLJFJH_02305at 407.393 kb on - strand, within OLJFJH_02305at 407.393 kb on - strand, within OLJFJH_02305at 407.424 kb on + strand, within OLJFJH_02305at 407.427 kb on + strand, within OLJFJH_02305

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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405,028 + OLJFJH_02290 0.49 -0.6
405,028 + OLJFJH_02290 0.49 +0.8
405,028 + OLJFJH_02290 0.49 +0.5
405,029 - OLJFJH_02290 0.49 -1.4
405,029 - OLJFJH_02290 0.49 +0.2
405,237 + -0.3
405,238 - -0.4
405,293 + -0.9
405,294 - +2.3
405,444 - OLJFJH_02295 0.31 +0.0
405,528 - OLJFJH_02295 0.46 -0.6
405,552 + OLJFJH_02295 0.50 +0.4
405,552 + OLJFJH_02295 0.50 -1.7
405,553 - OLJFJH_02295 0.50 -0.5
405,553 - OLJFJH_02295 0.50 -0.2
405,644 - OLJFJH_02295 0.65 +0.0
405,783 - OLJFJH_02295 0.89 -1.0
405,783 - OLJFJH_02295 0.89 -2.0
405,811 + +1.7
405,819 - +0.2
405,869 + -0.3
405,873 + -1.2
405,873 + -0.7
405,873 + +0.6
405,873 + -1.4
405,873 + -1.5
405,874 - -1.1
405,874 - -1.3
405,874 - -0.8
405,906 - -1.4
406,032 + OLJFJH_02300 0.30 -0.0
406,033 - OLJFJH_02300 0.30 -1.9
406,056 + OLJFJH_02300 0.34 -1.8
406,057 - OLJFJH_02300 0.35 -1.2
406,177 + OLJFJH_02300 0.55 -1.1
406,177 + OLJFJH_02300 0.55 -1.1
406,178 - OLJFJH_02300 0.56 -0.5
406,200 + OLJFJH_02300 0.60 -1.2
406,200 + OLJFJH_02300 0.60 -1.7
406,201 - OLJFJH_02300 0.60 -0.8
406,416 + -1.1
406,425 + +2.1
406,425 + +1.0
406,426 - -0.1
406,426 - +0.1
406,426 - +1.2
406,426 - +0.4
406,430 - +0.6
406,504 + -0.6
406,623 - -0.5
406,705 - OLJFJH_02305 0.12 +0.5
406,706 + OLJFJH_02305 0.12 +1.3
406,706 + OLJFJH_02305 0.12 -1.1
406,808 + OLJFJH_02305 0.18 -0.4
406,809 - OLJFJH_02305 0.18 +0.5
406,815 + OLJFJH_02305 0.18 -0.8
406,816 - OLJFJH_02305 0.18 +0.2
406,816 - OLJFJH_02305 0.18 +1.0
406,932 + OLJFJH_02305 0.24 -0.9
406,932 + OLJFJH_02305 0.24 -0.1
406,933 - OLJFJH_02305 0.24 +1.4
406,933 - OLJFJH_02305 0.24 -0.5
406,933 - OLJFJH_02305 0.24 -0.8
406,933 - OLJFJH_02305 0.24 -0.7
406,933 - OLJFJH_02305 0.24 -1.5
406,933 - OLJFJH_02305 0.24 +0.9
406,934 + OLJFJH_02305 0.24 -0.1
406,934 + OLJFJH_02305 0.24 -0.3
406,934 + OLJFJH_02305 0.24 -1.3
406,934 + OLJFJH_02305 0.24 -1.4
406,935 - OLJFJH_02305 0.24 -1.6
406,935 - OLJFJH_02305 0.24 -1.6
407,009 - OLJFJH_02305 0.28 -0.7
407,012 - OLJFJH_02305 0.28 +3.3
407,103 + OLJFJH_02305 0.33 -0.1
407,104 - OLJFJH_02305 0.33 -0.5
407,104 - OLJFJH_02305 0.33 +0.7
407,113 + OLJFJH_02305 0.33 +0.5
407,114 - OLJFJH_02305 0.33 -0.5
407,222 + OLJFJH_02305 0.39 -0.3
407,222 + OLJFJH_02305 0.39 +0.5
407,222 + OLJFJH_02305 0.39 +1.5
407,222 + OLJFJH_02305 0.39 +0.3
407,222 + OLJFJH_02305 0.39 -0.0
407,223 - OLJFJH_02305 0.39 -0.4
407,289 + OLJFJH_02305 0.42 +0.5
407,289 + OLJFJH_02305 0.42 -0.1
407,290 - OLJFJH_02305 0.42 -2.3
407,290 - OLJFJH_02305 0.42 +0.9
407,292 - OLJFJH_02305 0.43 -0.2
407,292 - OLJFJH_02305 0.43 +2.6
407,301 - OLJFJH_02305 0.43 -1.9
407,304 + OLJFJH_02305 0.43 -0.9
407,332 + OLJFJH_02305 0.45 -0.0
407,332 + OLJFJH_02305 0.45 +0.3
407,333 - OLJFJH_02305 0.45 -0.5
407,388 + OLJFJH_02305 0.47 -0.0
407,388 + OLJFJH_02305 0.47 -1.4
407,388 + OLJFJH_02305 0.47 -0.4
407,388 + OLJFJH_02305 0.47 -0.0
407,389 - OLJFJH_02305 0.48 +0.9
407,389 - OLJFJH_02305 0.48 -0.6
407,389 - OLJFJH_02305 0.48 +0.4
407,392 + OLJFJH_02305 0.48 +0.5
407,392 + OLJFJH_02305 0.48 +1.0
407,392 + OLJFJH_02305 0.48 -0.0
407,393 - OLJFJH_02305 0.48 -0.5
407,393 - OLJFJH_02305 0.48 -1.0
407,393 - OLJFJH_02305 0.48 -0.3
407,424 + OLJFJH_02305 0.49 +1.1
407,427 + OLJFJH_02305 0.49 +0.7

Or see this region's nucleotide sequence