Strain Fitness in Erwinia amylovora T8 around OLJFJH_02235

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02220 and OLJFJH_02225 overlap by 4 nucleotidesOLJFJH_02225 and OLJFJH_02230 are separated by 167 nucleotidesOLJFJH_02230 and OLJFJH_02235 are separated by 42 nucleotidesOLJFJH_02235 and OLJFJH_02240 are separated by 1 nucleotidesOLJFJH_02240 and OLJFJH_02245 overlap by 1 nucleotidesOLJFJH_02245 and OLJFJH_02250 are separated by 209 nucleotides OLJFJH_02220: OLJFJH_02220 - DedA family protein, at 394,568 to 395,242 _02220 OLJFJH_02225: OLJFJH_02225 - EnvZ/OmpR regulon moderator MzrA, at 395,239 to 395,631 _02225 OLJFJH_02230: OLJFJH_02230 - DUF1090 domain-containing protein, at 395,799 to 396,170 _02230 OLJFJH_02235: OLJFJH_02235 - DUF883 domain-containing protein, at 396,213 to 396,518 _02235 OLJFJH_02240: OLJFJH_02240 - Membrane protein, at 396,520 to 396,912 _02240 OLJFJH_02245: OLJFJH_02245 - YqjK-like family protein, at 396,912 to 397,193 _02245 OLJFJH_02250: OLJFJH_02250 - DoxX, at 397,403 to 397,795 _02250 Position (kb) 396 397Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 395.411 kb on - strand, within OLJFJH_02225at 395.416 kb on + strand, within OLJFJH_02225at 395.556 kb on + strand, within OLJFJH_02225at 395.669 kb on + strandat 395.670 kb on - strandat 395.670 kb on - strandat 395.672 kb on + strandat 395.672 kb on + strandat 395.706 kb on + strandat 395.706 kb on + strandat 395.706 kb on + strandat 395.706 kb on + strandat 395.707 kb on - strandat 395.726 kb on + strandat 395.761 kb on - strandat 395.793 kb on - strandat 395.806 kb on + strandat 395.807 kb on - strandat 395.807 kb on - strandat 395.807 kb on - strandat 395.810 kb on + strandat 395.810 kb on + strandat 395.811 kb on - strandat 395.847 kb on + strand, within OLJFJH_02230at 395.847 kb on + strand, within OLJFJH_02230at 395.847 kb on + strand, within OLJFJH_02230at 395.847 kb on + strand, within OLJFJH_02230at 395.848 kb on - strand, within OLJFJH_02230at 395.848 kb on - strand, within OLJFJH_02230at 395.848 kb on - strand, within OLJFJH_02230at 395.903 kb on - strand, within OLJFJH_02230at 395.928 kb on - strand, within OLJFJH_02230at 395.928 kb on - strand, within OLJFJH_02230at 395.960 kb on - strand, within OLJFJH_02230at 395.981 kb on + strand, within OLJFJH_02230at 396.061 kb on + strand, within OLJFJH_02230at 396.061 kb on + strand, within OLJFJH_02230at 396.062 kb on - strand, within OLJFJH_02230at 396.073 kb on + strand, within OLJFJH_02230at 396.105 kb on - strand, within OLJFJH_02230at 396.166 kb on - strandat 396.190 kb on + strandat 396.436 kb on - strand, within OLJFJH_02235at 396.436 kb on - strand, within OLJFJH_02235at 396.436 kb on - strand, within OLJFJH_02235at 396.729 kb on - strand, within OLJFJH_02240at 396.746 kb on + strand, within OLJFJH_02240at 396.746 kb on + strand, within OLJFJH_02240at 396.747 kb on - strand, within OLJFJH_02240at 396.835 kb on - strand, within OLJFJH_02240at 396.857 kb on + strand, within OLJFJH_02240at 396.858 kb on - strand, within OLJFJH_02240at 396.858 kb on - strand, within OLJFJH_02240at 396.959 kb on - strand, within OLJFJH_02245at 397.010 kb on + strand, within OLJFJH_02245at 397.021 kb on - strand, within OLJFJH_02245at 397.172 kb on + strandat 397.176 kb on + strandat 397.297 kb on - strandat 397.297 kb on - strandat 397.360 kb on + strandat 397.511 kb on + strand, within OLJFJH_02250at 397.511 kb on + strand, within OLJFJH_02250at 397.511 kb on + strand, within OLJFJH_02250at 397.511 kb on + strand, within OLJFJH_02250at 397.511 kb on + strand, within OLJFJH_02250at 397.511 kb on + strand, within OLJFJH_02250at 397.511 kb on + strand, within OLJFJH_02250at 397.512 kb on - strand, within OLJFJH_02250at 397.512 kb on - strand, within OLJFJH_02250at 397.512 kb on - strand, within OLJFJH_02250at 397.512 kb on - strand, within OLJFJH_02250at 397.512 kb on - strand, within OLJFJH_02250at 397.513 kb on + strand, within OLJFJH_02250at 397.514 kb on - strand, within OLJFJH_02250at 397.514 kb on - strand, within OLJFJH_02250

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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395,411 - OLJFJH_02225 0.44 +0.7
395,416 + OLJFJH_02225 0.45 +1.3
395,556 + OLJFJH_02225 0.81 +0.2
395,669 + -1.5
395,670 - +0.7
395,670 - +1.2
395,672 + +0.8
395,672 + -0.1
395,706 + +0.2
395,706 + -0.4
395,706 + +0.1
395,706 + -0.8
395,707 - -0.9
395,726 + -1.7
395,761 - -1.4
395,793 - -0.7
395,806 + -0.1
395,807 - +0.3
395,807 - -0.7
395,807 - -0.6
395,810 + -1.3
395,810 + +1.8
395,811 - +1.2
395,847 + OLJFJH_02230 0.13 +0.3
395,847 + OLJFJH_02230 0.13 +1.2
395,847 + OLJFJH_02230 0.13 -0.8
395,847 + OLJFJH_02230 0.13 -0.5
395,848 - OLJFJH_02230 0.13 -0.9
395,848 - OLJFJH_02230 0.13 +2.5
395,848 - OLJFJH_02230 0.13 -1.0
395,903 - OLJFJH_02230 0.28 -0.2
395,928 - OLJFJH_02230 0.35 -1.3
395,928 - OLJFJH_02230 0.35 +1.9
395,960 - OLJFJH_02230 0.43 +1.5
395,981 + OLJFJH_02230 0.49 +1.0
396,061 + OLJFJH_02230 0.70 +0.8
396,061 + OLJFJH_02230 0.70 +0.1
396,062 - OLJFJH_02230 0.71 +1.5
396,073 + OLJFJH_02230 0.74 -0.3
396,105 - OLJFJH_02230 0.82 +4.4
396,166 - -0.8
396,190 + +2.1
396,436 - OLJFJH_02235 0.73 -1.8
396,436 - OLJFJH_02235 0.73 -0.8
396,436 - OLJFJH_02235 0.73 -0.2
396,729 - OLJFJH_02240 0.53 -1.2
396,746 + OLJFJH_02240 0.58 -0.2
396,746 + OLJFJH_02240 0.58 +0.2
396,747 - OLJFJH_02240 0.58 -0.3
396,835 - OLJFJH_02240 0.80 -0.2
396,857 + OLJFJH_02240 0.86 -0.6
396,858 - OLJFJH_02240 0.86 +0.2
396,858 - OLJFJH_02240 0.86 +0.7
396,959 - OLJFJH_02245 0.17 -1.1
397,010 + OLJFJH_02245 0.35 -0.0
397,021 - OLJFJH_02245 0.39 +2.5
397,172 + -0.6
397,176 + +0.0
397,297 - -0.3
397,297 - +1.0
397,360 + -0.2
397,511 + OLJFJH_02250 0.27 -1.8
397,511 + OLJFJH_02250 0.27 -0.1
397,511 + OLJFJH_02250 0.27 +1.1
397,511 + OLJFJH_02250 0.27 -0.3
397,511 + OLJFJH_02250 0.27 +0.2
397,511 + OLJFJH_02250 0.27 +0.7
397,511 + OLJFJH_02250 0.27 -0.5
397,512 - OLJFJH_02250 0.28 -1.3
397,512 - OLJFJH_02250 0.28 +1.3
397,512 - OLJFJH_02250 0.28 +0.6
397,512 - OLJFJH_02250 0.28 -1.2
397,512 - OLJFJH_02250 0.28 -0.3
397,513 + OLJFJH_02250 0.28 -0.7
397,514 - OLJFJH_02250 0.28 +1.2
397,514 - OLJFJH_02250 0.28 -0.0

Or see this region's nucleotide sequence