Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01985 and OLJFJH_01990 are separated by 123 nucleotides OLJFJH_01990 and OLJFJH_01995 are separated by 750 nucleotides OLJFJH_01995 and OLJFJH_02000 overlap by 10 nucleotides OLJFJH_02000 and OLJFJH_02005 are separated by 23 nucleotides OLJFJH_02005 and OLJFJH_02010 overlap by 10 nucleotides
OLJFJH_01985: OLJFJH_01985 - hypothetical protein, at 352,218 to 352,307
_01985
OLJFJH_01990: OLJFJH_01990 - tRNA-Ile2, at 352,431 to 352,507
_01990
OLJFJH_01995: OLJFJH_01995 - DUF2931 domain-containing protein, at 353,258 to 353,917
_01995
OLJFJH_02000: OLJFJH_02000 - hypothetical protein, at 353,908 to 354,084
_02000
OLJFJH_02005: OLJFJH_02005 - DUF2931 domain-containing protein, at 354,108 to 354,767
_02005
OLJFJH_02010: OLJFJH_02010 - hypothetical protein, at 354,758 to 354,934
_02010
Position (kb) 353
354 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 352.385 kb on - strand at 352.710 kb on + strand at 352.710 kb on + strand at 352.710 kb on + strand at 352.711 kb on - strand at 352.711 kb on - strand at 352.735 kb on - strand at 352.764 kb on - strand at 352.805 kb on + strand at 352.834 kb on + strand at 352.835 kb on - strand at 352.835 kb on - strand at 352.838 kb on + strand at 352.944 kb on + strand at 352.945 kb on - strand at 352.979 kb on + strand at 353.055 kb on + strand at 353.055 kb on + strand at 353.055 kb on + strand at 353.056 kb on - strand at 353.179 kb on - strand at 353.179 kb on - strand at 353.179 kb on - strand at 353.223 kb on + strand at 353.224 kb on - strand at 353.224 kb on - strand at 353.224 kb on - strand at 353.232 kb on - strand at 353.383 kb on - strand, within OLJFJH_01995 at 353.383 kb on - strand, within OLJFJH_01995
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7 remove 352,385 - -1.1 352,710 + +0.3 352,710 + +0.9 352,710 + -1.7 352,711 - +1.8 352,711 - +0.3 352,735 - -0.4 352,764 - -0.5 352,805 + +0.4 352,834 + +1.4 352,835 - +0.8 352,835 - -0.5 352,838 + -0.0 352,944 + +4.3 352,945 - +0.3 352,979 + +1.6 353,055 + +0.8 353,055 + +1.0 353,055 + +0.7 353,056 - -0.1 353,179 - -1.1 353,179 - +1.6 353,179 - +0.4 353,223 + +1.0 353,224 - +0.7 353,224 - +0.2 353,224 - +0.4 353,232 - +0.1 353,383 - OLJFJH_01995 0.19 -0.9 353,383 - OLJFJH_01995 0.19 -1.6
Or see this region's nucleotide sequence