Strain Fitness in Erwinia amylovora T8 around OLJFJH_01730

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01725 and OLJFJH_01730 are separated by 299 nucleotidesOLJFJH_01730 and OLJFJH_01735 overlap by 4 nucleotides OLJFJH_01725: OLJFJH_01725 - RHS repeat-associated core domain-containing protein, at 294,479 to 295,249 _01725 OLJFJH_01730: OLJFJH_01730 - hypothetical protein, at 295,549 to 295,812 _01730 OLJFJH_01735: OLJFJH_01735 - hypothetical protein, at 295,809 to 297,860 _01735 Position (kb) 295 296Strain fitness (log2 ratio) -1 0 1 2 3 4at 294.563 kb on - strand, within OLJFJH_01725at 294.752 kb on - strand, within OLJFJH_01725at 294.753 kb on + strand, within OLJFJH_01725at 294.753 kb on + strand, within OLJFJH_01725at 294.754 kb on - strand, within OLJFJH_01725at 294.821 kb on - strand, within OLJFJH_01725at 294.936 kb on + strand, within OLJFJH_01725at 294.948 kb on - strand, within OLJFJH_01725at 294.953 kb on - strand, within OLJFJH_01725at 294.953 kb on - strand, within OLJFJH_01725at 295.128 kb on + strand, within OLJFJH_01725at 295.507 kb on - strandat 295.507 kb on - strandat 295.508 kb on + strandat 295.607 kb on + strand, within OLJFJH_01730at 295.663 kb on + strand, within OLJFJH_01730at 295.705 kb on + strand, within OLJFJH_01730at 295.706 kb on - strand, within OLJFJH_01730at 295.854 kb on + strandat 295.855 kb on - strandat 295.894 kb on - strandat 296.033 kb on + strand, within OLJFJH_01735at 296.033 kb on + strand, within OLJFJH_01735at 296.034 kb on - strand, within OLJFJH_01735at 296.038 kb on + strand, within OLJFJH_01735at 296.038 kb on + strand, within OLJFJH_01735at 296.039 kb on - strand, within OLJFJH_01735at 296.063 kb on + strand, within OLJFJH_01735at 296.076 kb on - strand, within OLJFJH_01735at 296.102 kb on + strand, within OLJFJH_01735at 296.103 kb on - strand, within OLJFJH_01735at 296.110 kb on + strand, within OLJFJH_01735at 296.111 kb on - strand, within OLJFJH_01735at 296.111 kb on - strand, within OLJFJH_01735at 296.111 kb on - strand, within OLJFJH_01735at 296.112 kb on + strand, within OLJFJH_01735at 296.112 kb on + strand, within OLJFJH_01735at 296.129 kb on + strand, within OLJFJH_01735at 296.135 kb on + strand, within OLJFJH_01735at 296.136 kb on - strand, within OLJFJH_01735at 296.201 kb on + strand, within OLJFJH_01735at 296.201 kb on + strand, within OLJFJH_01735at 296.205 kb on - strand, within OLJFJH_01735at 296.205 kb on - strand, within OLJFJH_01735at 296.205 kb on - strand, within OLJFJH_01735at 296.205 kb on - strand, within OLJFJH_01735at 296.229 kb on - strand, within OLJFJH_01735

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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294,563 - OLJFJH_01725 0.11 +0.4
294,752 - OLJFJH_01725 0.35 -0.1
294,753 + OLJFJH_01725 0.36 +0.4
294,753 + OLJFJH_01725 0.36 -0.3
294,754 - OLJFJH_01725 0.36 -0.8
294,821 - OLJFJH_01725 0.44 -0.5
294,936 + OLJFJH_01725 0.59 +0.4
294,948 - OLJFJH_01725 0.61 -0.6
294,953 - OLJFJH_01725 0.61 -0.5
294,953 - OLJFJH_01725 0.61 +0.7
295,128 + OLJFJH_01725 0.84 -0.4
295,507 - -1.1
295,507 - -0.1
295,508 + -0.3
295,607 + OLJFJH_01730 0.22 +0.0
295,663 + OLJFJH_01730 0.43 -0.5
295,705 + OLJFJH_01730 0.59 -0.9
295,706 - OLJFJH_01730 0.59 -1.0
295,854 + -0.3
295,855 - -0.4
295,894 - +4.0
296,033 + OLJFJH_01735 0.11 -0.6
296,033 + OLJFJH_01735 0.11 -0.7
296,034 - OLJFJH_01735 0.11 -1.1
296,038 + OLJFJH_01735 0.11 +0.1
296,038 + OLJFJH_01735 0.11 -1.2
296,039 - OLJFJH_01735 0.11 -0.3
296,063 + OLJFJH_01735 0.12 +0.5
296,076 - OLJFJH_01735 0.13 -0.1
296,102 + OLJFJH_01735 0.14 +0.3
296,103 - OLJFJH_01735 0.14 -0.3
296,110 + OLJFJH_01735 0.15 -0.3
296,111 - OLJFJH_01735 0.15 -0.4
296,111 - OLJFJH_01735 0.15 -0.2
296,111 - OLJFJH_01735 0.15 -0.8
296,112 + OLJFJH_01735 0.15 -0.2
296,112 + OLJFJH_01735 0.15 -0.2
296,129 + OLJFJH_01735 0.16 +0.0
296,135 + OLJFJH_01735 0.16 +0.2
296,136 - OLJFJH_01735 0.16 -1.4
296,201 + OLJFJH_01735 0.19 -0.3
296,201 + OLJFJH_01735 0.19 +1.1
296,205 - OLJFJH_01735 0.19 -0.4
296,205 - OLJFJH_01735 0.19 +0.2
296,205 - OLJFJH_01735 0.19 -0.9
296,205 - OLJFJH_01735 0.19 +0.8
296,229 - OLJFJH_01735 0.20 +1.3

Or see this region's nucleotide sequence