Strain Fitness in Erwinia amylovora T8 around OLJFJH_00480

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00475 and OLJFJH_00480 are separated by 189 nucleotidesOLJFJH_00480 and OLJFJH_00485 overlap by 8 nucleotidesOLJFJH_00485 and OLJFJH_00490 are separated by 37 nucleotides OLJFJH_00475: OLJFJH_00475 - D-glycero-beta-D-manno-heptose 1 7-bisphosphate 7-phosphatase, at 5,998 to 6,558 _00475 OLJFJH_00480: OLJFJH_00480 - methionine ABC transporter ATP-binding protein MetN, at 6,748 to 7,779 _00480 OLJFJH_00485: OLJFJH_00485 - D-methionine transport system permease protein MetI, at 7,772 to 8,425 _00485 OLJFJH_00490: OLJFJH_00490 - methionine ABC transporter substrate-binding protein MetQ, at 8,463 to 9,278 _00490 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5.919 kb on + strandat 5.952 kb on + strandat 5.952 kb on + strandat 5.980 kb on + strandat 5.999 kb on + strandat 6.163 kb on - strand, within OLJFJH_00475at 6.592 kb on + strandat 6.675 kb on + strandat 6.738 kb on - strandat 6.738 kb on - strandat 6.799 kb on - strandat 6.877 kb on - strand, within OLJFJH_00480at 7.144 kb on - strand, within OLJFJH_00480at 7.147 kb on + strand, within OLJFJH_00480at 7.147 kb on + strand, within OLJFJH_00480at 7.147 kb on + strand, within OLJFJH_00480at 7.281 kb on + strand, within OLJFJH_00480at 7.504 kb on + strand, within OLJFJH_00480at 7.539 kb on + strand, within OLJFJH_00480at 7.539 kb on + strand, within OLJFJH_00480at 7.550 kb on + strand, within OLJFJH_00480at 7.551 kb on - strand, within OLJFJH_00480at 7.551 kb on - strand, within OLJFJH_00480at 7.635 kb on + strand, within OLJFJH_00480at 7.635 kb on + strand, within OLJFJH_00480at 7.635 kb on + strand, within OLJFJH_00480at 7.635 kb on + strand, within OLJFJH_00480at 7.635 kb on + strand, within OLJFJH_00480at 7.636 kb on - strand, within OLJFJH_00480at 7.636 kb on - strand, within OLJFJH_00480at 7.636 kb on - strand, within OLJFJH_00480at 7.639 kb on - strand, within OLJFJH_00480at 7.681 kb on - strandat 7.681 kb on - strandat 7.713 kb on + strandat 7.714 kb on - strandat 7.751 kb on + strandat 7.751 kb on + strandat 7.757 kb on + strandat 7.757 kb on + strandat 7.771 kb on + strandat 7.771 kb on + strandat 7.772 kb on - strandat 7.886 kb on + strand, within OLJFJH_00485at 7.887 kb on - strand, within OLJFJH_00485at 7.887 kb on - strand, within OLJFJH_00485at 7.887 kb on - strand, within OLJFJH_00485at 7.887 kb on - strand, within OLJFJH_00485at 7.975 kb on + strand, within OLJFJH_00485at 8.038 kb on - strand, within OLJFJH_00485at 8.059 kb on + strand, within OLJFJH_00485at 8.225 kb on - strand, within OLJFJH_00485at 8.225 kb on - strand, within OLJFJH_00485at 8.225 kb on - strand, within OLJFJH_00485at 8.225 kb on - strand, within OLJFJH_00485at 8.227 kb on + strand, within OLJFJH_00485at 8.228 kb on - strand, within OLJFJH_00485at 8.233 kb on - strand, within OLJFJH_00485at 8.313 kb on - strand, within OLJFJH_00485at 8.313 kb on - strand, within OLJFJH_00485at 8.313 kb on - strand, within OLJFJH_00485at 8.423 kb on + strandat 8.424 kb on - strandat 8.424 kb on - strandat 8.446 kb on + strandat 8.463 kb on - strandat 8.463 kb on - strandat 8.463 kb on - strandat 8.494 kb on + strandat 8.631 kb on + strand, within OLJFJH_00490at 8.631 kb on + strand, within OLJFJH_00490at 8.733 kb on + strand, within OLJFJH_00490at 8.734 kb on - strand, within OLJFJH_00490

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-7
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5,919 + -0.4
5,952 + +0.2
5,952 + -0.4
5,980 + +0.7
5,999 + +1.2
6,163 - OLJFJH_00475 0.29 +0.5
6,592 + +1.5
6,675 + +0.0
6,738 - +0.3
6,738 - -0.8
6,799 - -1.0
6,877 - OLJFJH_00480 0.12 -1.3
7,144 - OLJFJH_00480 0.38 -0.9
7,147 + OLJFJH_00480 0.39 -2.2
7,147 + OLJFJH_00480 0.39 -1.7
7,147 + OLJFJH_00480 0.39 -0.8
7,281 + OLJFJH_00480 0.52 -1.3
7,504 + OLJFJH_00480 0.73 -0.5
7,539 + OLJFJH_00480 0.77 -2.6
7,539 + OLJFJH_00480 0.77 -0.6
7,550 + OLJFJH_00480 0.78 -0.6
7,551 - OLJFJH_00480 0.78 -2.2
7,551 - OLJFJH_00480 0.78 -1.8
7,635 + OLJFJH_00480 0.86 -1.7
7,635 + OLJFJH_00480 0.86 -0.4
7,635 + OLJFJH_00480 0.86 +0.0
7,635 + OLJFJH_00480 0.86 -2.2
7,635 + OLJFJH_00480 0.86 -1.5
7,636 - OLJFJH_00480 0.86 -0.2
7,636 - OLJFJH_00480 0.86 -0.8
7,636 - OLJFJH_00480 0.86 -0.0
7,639 - OLJFJH_00480 0.86 -0.8
7,681 - +0.5
7,681 - -0.0
7,713 + +1.9
7,714 - -1.2
7,751 + -1.0
7,751 + +3.0
7,757 + -0.9
7,757 + +1.5
7,771 + -0.0
7,771 + -0.9
7,772 - -0.4
7,886 + OLJFJH_00485 0.17 -1.1
7,887 - OLJFJH_00485 0.18 -2.0
7,887 - OLJFJH_00485 0.18 -0.1
7,887 - OLJFJH_00485 0.18 +0.1
7,887 - OLJFJH_00485 0.18 -3.0
7,975 + OLJFJH_00485 0.31 +1.0
8,038 - OLJFJH_00485 0.41 +0.1
8,059 + OLJFJH_00485 0.44 -0.0
8,225 - OLJFJH_00485 0.69 -0.4
8,225 - OLJFJH_00485 0.69 -0.3
8,225 - OLJFJH_00485 0.69 -1.4
8,225 - OLJFJH_00485 0.69 +1.9
8,227 + OLJFJH_00485 0.70 -2.3
8,228 - OLJFJH_00485 0.70 +0.2
8,233 - OLJFJH_00485 0.70 -1.0
8,313 - OLJFJH_00485 0.83 -0.9
8,313 - OLJFJH_00485 0.83 -0.5
8,313 - OLJFJH_00485 0.83 +3.5
8,423 + -0.7
8,424 - +4.2
8,424 - -2.3
8,446 + -0.4
8,463 - +0.4
8,463 - -1.4
8,463 - +0.2
8,494 + -0.8
8,631 + OLJFJH_00490 0.21 -0.5
8,631 + OLJFJH_00490 0.21 -0.5
8,733 + OLJFJH_00490 0.33 -1.3
8,734 - OLJFJH_00490 0.33 -0.4

Or see this region's nucleotide sequence