Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27210

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuhpC and ydiM are separated by 226 nucleotidesydiM and ydiL are separated by 99 nucleotidesydiL and ydiK are separated by 428 nucleotides OKFHMN_27205: uhpC - MFS transporter, at 5,236,931 to 5,238,196 uhpC OKFHMN_27210: ydiM - Inner membrane transport protein YdiM, at 5,238,423 to 5,239,637 ydiM OKFHMN_27215: ydiL - Uncharacterized protein YdiL, at 5,239,737 to 5,240,093 ydiL OKFHMN_27225: ydiK - AI-2E family transporter YdiK, at 5,240,522 to 5,241,634 ydiK Position (kb) 5238 5239 5240Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5237.724 kb on + strand, within uhpCat 5238.622 kb on + strand, within ydiMat 5239.001 kb on - strand, within ydiMat 5239.127 kb on + strand, within ydiMat 5239.180 kb on - strand, within ydiMat 5239.645 kb on - strandat 5239.884 kb on - strand, within ydiLat 5240.099 kb on - strandat 5240.122 kb on - strandat 5240.138 kb on + strandat 5240.419 kb on + strandat 5240.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,237,724 + uhpC OKFHMN_27205 0.63 +1.1
5,238,622 + ydiM OKFHMN_27210 0.16 -2.9
5,239,001 - ydiM OKFHMN_27210 0.48 -2.0
5,239,127 + ydiM OKFHMN_27210 0.58 -0.1
5,239,180 - ydiM OKFHMN_27210 0.62 +1.6
5,239,645 - +2.5
5,239,884 - ydiL OKFHMN_27215 0.41 -1.5
5,240,099 - +0.8
5,240,122 - +0.1
5,240,138 + +0.8
5,240,419 + +1.7
5,240,439 + -1.8

Or see this region's nucleotide sequence