Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26760

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydjJ and ydjI are separated by 20 nucleotidesydjI and rbsK are separated by 4 nucleotidesrbsK and ydjG are separated by 9 nucleotides OKFHMN_26755: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 5,149,984 to 5,151,027 ydjJ OKFHMN_26760: ydjI - Uncharacterized protein YdjI, at 5,151,048 to 5,151,884 ydjI OKFHMN_26765: rbsK - sugar kinase, at 5,151,889 to 5,152,821 rbsK OKFHMN_26770: ydjG - NADH-dependent methylglyoxal reductase, at 5,152,831 to 5,153,811 ydjG Position (kb) 5151 5152Strain fitness (log2 ratio) -2 -1 0 1at 5150.111 kb on + strand, within ydjJat 5150.111 kb on + strand, within ydjJat 5150.301 kb on + strand, within ydjJat 5150.302 kb on - strand, within ydjJat 5150.658 kb on + strand, within ydjJat 5151.428 kb on + strand, within ydjIat 5151.539 kb on + strand, within ydjIat 5151.827 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
5,150,111 + ydjJ OKFHMN_26755 0.12 -0.6
5,150,111 + ydjJ OKFHMN_26755 0.12 -0.0
5,150,301 + ydjJ OKFHMN_26755 0.30 -0.3
5,150,302 - ydjJ OKFHMN_26755 0.30 +0.7
5,150,658 + ydjJ OKFHMN_26755 0.65 -1.9
5,151,428 + ydjI OKFHMN_26760 0.45 -1.0
5,151,539 + ydjI OKFHMN_26760 0.59 +1.1
5,151,827 - -0.2

Or see this region's nucleotide sequence