Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26750

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjL and ydjK are separated by 26 nucleotidesydjK and ydjJ are separated by 16 nucleotides OKFHMN_26745: ydjL - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjL, at 5,147,485 to 5,148,561 ydjL OKFHMN_26750: ydjK - Putative metabolite transport protein YdjK, at 5,148,588 to 5,149,967 ydjK OKFHMN_26755: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 5,149,984 to 5,151,027 ydjJ Position (kb) 5148 5149 5150Strain fitness (log2 ratio) -2 -1 0 1at 5147.649 kb on + strand, within ydjLat 5147.649 kb on + strand, within ydjLat 5148.417 kb on + strand, within ydjLat 5149.002 kb on + strand, within ydjKat 5149.002 kb on + strand, within ydjKat 5149.004 kb on + strand, within ydjKat 5149.004 kb on + strand, within ydjKat 5149.686 kb on + strand, within ydjKat 5149.686 kb on + strand, within ydjKat 5149.688 kb on + strand, within ydjKat 5149.716 kb on + strand, within ydjKat 5149.793 kb on + strand, within ydjKat 5149.807 kb on - strand, within ydjKat 5149.829 kb on + strand, within ydjKat 5150.111 kb on + strand, within ydjJat 5150.111 kb on + strand, within ydjJat 5150.301 kb on + strand, within ydjJat 5150.302 kb on - strand, within ydjJat 5150.658 kb on + strand, within ydjJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,147,649 + ydjL OKFHMN_26745 0.15 -1.5
5,147,649 + ydjL OKFHMN_26745 0.15 -0.2
5,148,417 + ydjL OKFHMN_26745 0.87 -0.0
5,149,002 + ydjK OKFHMN_26750 0.30 +0.0
5,149,002 + ydjK OKFHMN_26750 0.30 +0.7
5,149,004 + ydjK OKFHMN_26750 0.30 -0.0
5,149,004 + ydjK OKFHMN_26750 0.30 -0.9
5,149,686 + ydjK OKFHMN_26750 0.80 +0.1
5,149,686 + ydjK OKFHMN_26750 0.80 +0.4
5,149,688 + ydjK OKFHMN_26750 0.80 +0.3
5,149,716 + ydjK OKFHMN_26750 0.82 -0.7
5,149,793 + ydjK OKFHMN_26750 0.87 +1.4
5,149,807 - ydjK OKFHMN_26750 0.88 +0.2
5,149,829 + ydjK OKFHMN_26750 0.90 -2.0
5,150,111 + ydjJ OKFHMN_26755 0.12 -0.6
5,150,111 + ydjJ OKFHMN_26755 0.12 -0.0
5,150,301 + ydjJ OKFHMN_26755 0.30 -0.3
5,150,302 - ydjJ OKFHMN_26755 0.30 +0.7
5,150,658 + ydjJ OKFHMN_26755 0.65 -1.9

Or see this region's nucleotide sequence