Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mntP and OKFHMN_26510 overlap by 4 nucleotides OKFHMN_26510 and OKFHMN_26515 are separated by 310 nucleotides OKFHMN_26515 and manZ are separated by 54 nucleotides manZ and manY are separated by 12 nucleotides manY and manX are separated by 62 nucleotides
OKFHMN_26505: mntP - manganese efflux pump MntP, at 5,102,335 to 5,102,901
mntP
OKFHMN_26510: OKFHMN_26510 - Membrane protein, at 5,102,898 to 5,103,020
_26510
OKFHMN_26515: OKFHMN_26515 - UPF0266 membrane protein YobD, at 5,103,331 to 5,103,789
_26515
OKFHMN_26520: manZ - PTS mannose transporter subunit IID, at 5,103,844 to 5,104,695
manZ
OKFHMN_26525: manY - PTS mannose transporter subunit IIC, at 5,104,708 to 5,105,508
manY
OKFHMN_26530: manX - PTS mannose transporter subunit IIAB, at 5,105,571 to 5,106,542
manX
Position (kb) 5103
5104
5105 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5102.866 kb on - strand at 5102.928 kb on - strand, within OKFHMN_26510 at 5102.928 kb on - strand, within OKFHMN_26510 at 5102.928 kb on - strand, within OKFHMN_26510 at 5103.021 kb on - strand at 5103.054 kb on - strand at 5103.115 kb on - strand at 5103.539 kb on - strand, within OKFHMN_26515 at 5103.835 kb on - strand at 5103.846 kb on - strand at 5103.983 kb on - strand, within manZ at 5104.009 kb on - strand, within manZ at 5104.209 kb on - strand, within manZ at 5104.442 kb on - strand, within manZ at 5104.621 kb on - strand at 5104.675 kb on - strand at 5104.686 kb on + strand at 5104.776 kb on - strand at 5104.785 kb on + strand at 5104.797 kb on - strand, within manY at 5104.797 kb on - strand, within manY at 5104.816 kb on - strand, within manY at 5105.024 kb on - strand, within manY at 5105.161 kb on - strand, within manY at 5105.163 kb on + strand, within manY at 5105.266 kb on - strand, within manY at 5105.411 kb on - strand, within manY at 5105.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 5,102,866 - -0.9 5,102,928 - OKFHMN_26510 0.24 -3.8 5,102,928 - OKFHMN_26510 0.24 -0.2 5,102,928 - OKFHMN_26510 0.24 +0.8 5,103,021 - -0.9 5,103,054 - +0.1 5,103,115 - -1.3 5,103,539 - OKFHMN_26515 0.45 -0.1 5,103,835 - +0.7 5,103,846 - +0.6 5,103,983 - manZ OKFHMN_26520 0.16 -1.6 5,104,009 - manZ OKFHMN_26520 0.19 -1.6 5,104,209 - manZ OKFHMN_26520 0.43 -0.1 5,104,442 - manZ OKFHMN_26520 0.70 -2.2 5,104,621 - -1.3 5,104,675 - +1.2 5,104,686 + +0.5 5,104,776 - +1.6 5,104,785 + -6.5 5,104,797 - manY OKFHMN_26525 0.11 +0.2 5,104,797 - manY OKFHMN_26525 0.11 -0.2 5,104,816 - manY OKFHMN_26525 0.13 +0.6 5,105,024 - manY OKFHMN_26525 0.39 +0.5 5,105,161 - manY OKFHMN_26525 0.57 +0.3 5,105,163 + manY OKFHMN_26525 0.57 +0.4 5,105,266 - manY OKFHMN_26525 0.70 -0.1 5,105,411 - manY OKFHMN_26525 0.88 -0.1 5,105,573 - +0.9
Or see this region's nucleotide sequence