Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tyrP and yecH are separated by 191 nucleotides yecH and ftnA are separated by 36 nucleotides ftnA and yecR are separated by 170 nucleotides yecR and azuC are separated by 261 nucleotides azuC and yecJ are separated by 114 nucleotides
OKFHMN_26035: tyrP - tyrosine transporter TyrP, at 5,018,375 to 5,019,586
tyrP
OKFHMN_26040: yecH - Uncharacterized protein YecH, at 5,019,778 to 5,020,017
yecH
OKFHMN_26045: ftnA - non-heme ferritin, at 5,020,054 to 5,020,551
ftnA
OKFHMN_26050: yecR - Uncharacterized protein YecR, at 5,020,722 to 5,021,045
yecR
OKFHMN_26055: azuC - stress response protein AzuC, at 5,021,307 to 5,021,393
azuC
OKFHMN_26060: yecJ - Uncharacterized protein YecJ, at 5,021,508 to 5,021,759
yecJ
Position (kb) 5020
5021 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5019.313 kb on - strand, within tyrP at 5019.318 kb on - strand, within tyrP at 5019.328 kb on + strand, within tyrP at 5019.329 kb on - strand, within tyrP at 5019.329 kb on - strand, within tyrP at 5019.367 kb on - strand, within tyrP at 5019.429 kb on - strand, within tyrP at 5019.442 kb on - strand, within tyrP at 5019.612 kb on - strand at 5019.669 kb on + strand at 5020.130 kb on - strand, within ftnA at 5020.314 kb on - strand, within ftnA at 5020.374 kb on - strand, within ftnA at 5020.393 kb on - strand, within ftnA at 5020.555 kb on - strand at 5020.555 kb on - strand at 5020.934 kb on - strand, within yecR at 5021.063 kb on - strand at 5021.080 kb on + strand at 5021.256 kb on + strand at 5021.256 kb on + strand at 5021.258 kb on + strand at 5021.342 kb on + strand, within azuC at 5021.381 kb on + strand, within azuC at 5021.473 kb on + strand at 5021.473 kb on + strand at 5021.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 5,019,313 - tyrP OKFHMN_26035 0.77 -3.7 5,019,318 - tyrP OKFHMN_26035 0.78 +1.6 5,019,328 + tyrP OKFHMN_26035 0.79 -0.1 5,019,329 - tyrP OKFHMN_26035 0.79 -0.4 5,019,329 - tyrP OKFHMN_26035 0.79 -1.1 5,019,367 - tyrP OKFHMN_26035 0.82 -0.3 5,019,429 - tyrP OKFHMN_26035 0.87 +0.9 5,019,442 - tyrP OKFHMN_26035 0.88 -0.2 5,019,612 - -0.3 5,019,669 + +2.8 5,020,130 - ftnA OKFHMN_26045 0.15 -0.4 5,020,314 - ftnA OKFHMN_26045 0.52 -2.6 5,020,374 - ftnA OKFHMN_26045 0.64 +0.5 5,020,393 - ftnA OKFHMN_26045 0.68 -1.4 5,020,555 - -0.5 5,020,555 - +0.1 5,020,934 - yecR OKFHMN_26050 0.65 -0.7 5,021,063 - -2.3 5,021,080 + +0.4 5,021,256 + -0.6 5,021,256 + -3.7 5,021,258 + -0.1 5,021,342 + azuC OKFHMN_26055 0.40 +1.2 5,021,381 + azuC OKFHMN_26055 0.85 -0.1 5,021,473 + +0.9 5,021,473 + +0.0 5,021,473 + -1.8
Or see this region's nucleotide sequence