Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26015

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntxerD and OKFHMN_26015 are separated by 245 nucleotidesOKFHMN_26015 and tnp-IS3 overlap by 35 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotides OKFHMN_26010: xerD - integrase, at 5,014,976 to 5,015,977 xerD OKFHMN_26015: OKFHMN_26015 - AMP nucleosidase, at 5,016,223 to 5,016,306 _26015 OKFHMN_26020: tnp-IS3 - IS3 family transposase, at 5,016,272 to 5,017,159 tnp-IS3 OKFHMN_26025: tnp-IS3 - IS3 family transposase, at 5,017,159 to 5,017,485 tnp-IS3 Position (kb) 5016 5017Strain fitness (log2 ratio) -1 0 1at 5015.290 kb on + strand, within xerDat 5015.347 kb on + strand, within xerDat 5015.741 kb on + strand, within xerDat 5016.001 kb on + strandat 5016.262 kb on - strand, within OKFHMN_26015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
5,015,290 + xerD OKFHMN_26010 0.31 +0.4
5,015,347 + xerD OKFHMN_26010 0.37 +0.6
5,015,741 + xerD OKFHMN_26010 0.76 -1.2
5,016,001 + +0.6
5,016,262 - OKFHMN_26015 0.46 +0.4

Or see this region's nucleotide sequence