Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25660

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliR and fliQ are separated by 7 nucleotidesfliQ and fliP are separated by 9 nucleotidesfliP and fliO overlap by 1 nucleotides OKFHMN_25655: fliR - flagellar type III secretion system protein FliR, at 4,962,900 to 4,963,685 fliR OKFHMN_25660: fliQ - flagellar biosynthesis protein FliQ, at 4,963,693 to 4,963,962 fliQ OKFHMN_25665: fliP - flagellar type III secretion system pore protein FliP, at 4,963,972 to 4,964,709 fliP OKFHMN_25670: fliO - flagellar type III secretion system protein FliO, at 4,964,709 to 4,965,074 fliO Position (kb) 4963 4964Strain fitness (log2 ratio) -2 -1 0 1at 4962.923 kb on + strandat 4963.322 kb on + strand, within fliRat 4963.686 kb on - strandat 4963.706 kb on + strandat 4963.707 kb on - strandat 4963.737 kb on - strand, within fliQat 4964.270 kb on - strand, within fliPat 4964.270 kb on - strand, within fliPat 4964.413 kb on - strand, within fliP

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,962,923 + +0.3
4,963,322 + fliR OKFHMN_25655 0.54 -2.0
4,963,686 - +1.6
4,963,706 + -0.3
4,963,707 - -0.8
4,963,737 - fliQ OKFHMN_25660 0.16 -0.1
4,964,270 - fliP OKFHMN_25665 0.40 -0.7
4,964,270 - fliP OKFHMN_25665 0.40 +0.6
4,964,413 - fliP OKFHMN_25665 0.60 -0.3

Or see this region's nucleotide sequence