Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25300 and OKFHMN_25305 are separated by 109 nucleotides OKFHMN_25305 and OKFHMN_25315 are separated by 186 nucleotides OKFHMN_25315 and OKFHMN_25320 are separated by 447 nucleotides
OKFHMN_25300: OKFHMN_25300 - DUF551 domain-containing protein, at 4,909,178 to 4,909,741
_25300
OKFHMN_25305: OKFHMN_25305 - hypothetical protein, at 4,909,851 to 4,909,955
_25305
OKFHMN_25315: OKFHMN_25315 - protein hokC, at 4,910,142 to 4,910,354
_25315
OKFHMN_25320: OKFHMN_25320 - DUF968 domain-containing protein, at 4,910,802 to 4,911,851
_25320
Position (kb) 4910
4911 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4909.772 kb on + strand at 4909.772 kb on + strand at 4909.773 kb on - strand at 4909.773 kb on - strand at 4909.776 kb on + strand at 4909.850 kb on + strand at 4909.914 kb on + strand, within OKFHMN_25305 at 4910.466 kb on - strand at 4910.900 kb on - strand at 4911.071 kb on + strand, within OKFHMN_25320 at 4911.072 kb on - strand, within OKFHMN_25320 at 4911.283 kb on + strand, within OKFHMN_25320
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,909,772 + +0.7 4,909,772 + -0.6 4,909,773 - +1.7 4,909,773 - -2.8 4,909,776 + -0.6 4,909,850 + -0.5 4,909,914 + OKFHMN_25305 0.60 -1.2 4,910,466 - -0.3 4,910,900 - -1.7 4,911,071 + OKFHMN_25320 0.26 -0.1 4,911,072 - OKFHMN_25320 0.26 +0.3 4,911,283 + OKFHMN_25320 0.46 -2.5
Or see this region's nucleotide sequence