Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23085

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_23075 and OKFHMN_23080 are separated by 178 nucleotidesOKFHMN_23080 and lysR are separated by 153 nucleotideslysR and araJ are separated by 151 nucleotides OKFHMN_23075: OKFHMN_23075 - hypothetical protein, at 4,494,274 to 4,495,344 _23075 OKFHMN_23080: OKFHMN_23080 - hypothetical protein, at 4,495,523 to 4,495,654 _23080 OKFHMN_23085: lysR - transcriptional regulator, at 4,495,808 to 4,496,686 lysR OKFHMN_23090: araJ - MFS transporter, at 4,496,838 to 4,498,028 araJ Position (kb) 4495 4496 4497Strain fitness (log2 ratio) -3 -2 -1 0 1at 4495.171 kb on + strand, within OKFHMN_23075at 4495.203 kb on + strand, within OKFHMN_23075at 4495.204 kb on - strand, within OKFHMN_23075at 4495.483 kb on + strandat 4495.521 kb on + strandat 4495.738 kb on - strandat 4495.750 kb on - strandat 4495.750 kb on - strandat 4495.755 kb on + strandat 4495.804 kb on + strandat 4495.968 kb on - strand, within lysRat 4496.107 kb on + strand, within lysRat 4496.549 kb on - strand, within lysRat 4496.891 kb on + strandat 4497.143 kb on + strand, within araJat 4497.164 kb on + strand, within araJat 4497.302 kb on + strand, within araJat 4497.323 kb on + strand, within araJat 4497.344 kb on + strand, within araJat 4497.383 kb on + strand, within araJat 4497.483 kb on - strand, within araJat 4497.504 kb on + strand, within araJat 4497.548 kb on + strand, within araJat 4497.549 kb on - strand, within araJat 4497.570 kb on - strand, within araJat 4497.586 kb on - strand, within araJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,495,171 + OKFHMN_23075 0.84 -0.0
4,495,203 + OKFHMN_23075 0.87 +0.8
4,495,204 - OKFHMN_23075 0.87 +0.0
4,495,483 + +0.2
4,495,521 + -0.6
4,495,738 - +0.3
4,495,750 - -2.9
4,495,750 - -2.6
4,495,755 + +0.6
4,495,804 + +0.9
4,495,968 - lysR OKFHMN_23085 0.18 +1.4
4,496,107 + lysR OKFHMN_23085 0.34 +0.5
4,496,549 - lysR OKFHMN_23085 0.84 -3.2
4,496,891 + +1.2
4,497,143 + araJ OKFHMN_23090 0.26 -0.4
4,497,164 + araJ OKFHMN_23090 0.27 +0.5
4,497,302 + araJ OKFHMN_23090 0.39 +1.2
4,497,323 + araJ OKFHMN_23090 0.41 +1.0
4,497,344 + araJ OKFHMN_23090 0.42 -0.7
4,497,383 + araJ OKFHMN_23090 0.46 -0.4
4,497,483 - araJ OKFHMN_23090 0.54 +0.9
4,497,504 + araJ OKFHMN_23090 0.56 +0.5
4,497,548 + araJ OKFHMN_23090 0.60 +0.2
4,497,549 - araJ OKFHMN_23090 0.60 +1.5
4,497,570 - araJ OKFHMN_23090 0.61 +1.3
4,497,586 - araJ OKFHMN_23090 0.63 +0.1

Or see this region's nucleotide sequence