Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_22500 and OKFHMN_22505 overlap by 1 nucleotides OKFHMN_22505 and OKFHMN_22510 overlap by 14 nucleotides OKFHMN_22510 and oafA are separated by 9 nucleotides
OKFHMN_22500: OKFHMN_22500 - Phage-tail-NK domain-containing protein, at 4,377,254 to 4,377,823
_22500
OKFHMN_22505: OKFHMN_22505 - DUF2824 domain-containing protein, at 4,377,823 to 4,378,290
_22505
OKFHMN_22510: OKFHMN_22510 - DNA transfer protein, at 4,378,277 to 4,378,957
_22510
OKFHMN_22515: oafA - acyltransferase, at 4,378,967 to 4,380,103
oafA
Position (kb) 4378
4379 Strain fitness (log2 ratio) -1
0
1
2 at 4377.277 kb on - strand at 4377.373 kb on + strand, within OKFHMN_22500 at 4377.420 kb on - strand, within OKFHMN_22500 at 4377.658 kb on - strand, within OKFHMN_22500 at 4377.660 kb on + strand, within OKFHMN_22500 at 4377.661 kb on - strand, within OKFHMN_22500 at 4377.702 kb on + strand, within OKFHMN_22500 at 4377.706 kb on + strand, within OKFHMN_22500 at 4377.706 kb on + strand, within OKFHMN_22500 at 4377.707 kb on - strand, within OKFHMN_22500 at 4377.707 kb on - strand, within OKFHMN_22500 at 4377.830 kb on + strand at 4377.916 kb on + strand, within OKFHMN_22505 at 4377.916 kb on + strand, within OKFHMN_22505 at 4377.916 kb on + strand, within OKFHMN_22505 at 4377.919 kb on + strand, within OKFHMN_22505 at 4377.938 kb on + strand, within OKFHMN_22505 at 4377.939 kb on - strand, within OKFHMN_22505 at 4377.939 kb on - strand, within OKFHMN_22505 at 4377.941 kb on - strand, within OKFHMN_22505 at 4377.941 kb on - strand, within OKFHMN_22505 at 4378.058 kb on + strand, within OKFHMN_22505 at 4378.058 kb on + strand, within OKFHMN_22505 at 4378.059 kb on - strand, within OKFHMN_22505 at 4378.204 kb on + strand, within OKFHMN_22505 at 4378.204 kb on + strand, within OKFHMN_22505 at 4378.240 kb on + strand, within OKFHMN_22505 at 4378.247 kb on + strand at 4378.285 kb on - strand at 4378.285 kb on - strand at 4378.328 kb on + strand at 4378.328 kb on + strand at 4378.331 kb on - strand at 4378.357 kb on + strand, within OKFHMN_22510 at 4378.460 kb on + strand, within OKFHMN_22510 at 4378.460 kb on + strand, within OKFHMN_22510 at 4378.461 kb on - strand, within OKFHMN_22510 at 4378.461 kb on - strand, within OKFHMN_22510 at 4378.464 kb on + strand, within OKFHMN_22510 at 4378.464 kb on + strand, within OKFHMN_22510 at 4378.523 kb on + strand, within OKFHMN_22510 at 4378.524 kb on - strand, within OKFHMN_22510 at 4378.539 kb on - strand, within OKFHMN_22510 at 4378.540 kb on + strand, within OKFHMN_22510 at 4378.602 kb on + strand, within OKFHMN_22510 at 4378.602 kb on + strand, within OKFHMN_22510 at 4378.748 kb on + strand, within OKFHMN_22510 at 4379.055 kb on + strand at 4379.074 kb on + strand at 4379.268 kb on - strand, within oafA at 4379.441 kb on - strand, within oafA at 4379.459 kb on + strand, within oafA at 4379.459 kb on + strand, within oafA at 4379.702 kb on - strand, within oafA at 4379.702 kb on - strand, within oafA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,377,277 - -0.9 4,377,373 + OKFHMN_22500 0.21 -0.3 4,377,420 - OKFHMN_22500 0.29 +1.0 4,377,658 - OKFHMN_22500 0.71 +1.7 4,377,660 + OKFHMN_22500 0.71 -0.5 4,377,661 - OKFHMN_22500 0.71 +1.5 4,377,702 + OKFHMN_22500 0.79 -1.1 4,377,706 + OKFHMN_22500 0.79 -1.2 4,377,706 + OKFHMN_22500 0.79 +1.1 4,377,707 - OKFHMN_22500 0.79 -0.8 4,377,707 - OKFHMN_22500 0.79 +0.5 4,377,830 + +0.9 4,377,916 + OKFHMN_22505 0.20 +2.0 4,377,916 + OKFHMN_22505 0.20 -0.0 4,377,916 + OKFHMN_22505 0.20 +1.4 4,377,919 + OKFHMN_22505 0.21 +0.5 4,377,938 + OKFHMN_22505 0.25 +1.6 4,377,939 - OKFHMN_22505 0.25 +1.0 4,377,939 - OKFHMN_22505 0.25 +1.4 4,377,941 - OKFHMN_22505 0.25 -1.7 4,377,941 - OKFHMN_22505 0.25 +0.5 4,378,058 + OKFHMN_22505 0.50 -0.1 4,378,058 + OKFHMN_22505 0.50 -1.0 4,378,059 - OKFHMN_22505 0.50 -0.6 4,378,204 + OKFHMN_22505 0.81 +1.6 4,378,204 + OKFHMN_22505 0.81 -0.2 4,378,240 + OKFHMN_22505 0.89 +0.8 4,378,247 + -1.7 4,378,285 - -0.3 4,378,285 - +0.1 4,378,328 + -1.7 4,378,328 + -0.5 4,378,331 - +0.5 4,378,357 + OKFHMN_22510 0.12 -0.1 4,378,460 + OKFHMN_22510 0.27 +0.9 4,378,460 + OKFHMN_22510 0.27 +0.1 4,378,461 - OKFHMN_22510 0.27 +0.4 4,378,461 - OKFHMN_22510 0.27 +0.1 4,378,464 + OKFHMN_22510 0.27 +0.2 4,378,464 + OKFHMN_22510 0.27 -0.8 4,378,523 + OKFHMN_22510 0.36 +0.8 4,378,524 - OKFHMN_22510 0.36 -1.1 4,378,539 - OKFHMN_22510 0.38 +1.1 4,378,540 + OKFHMN_22510 0.39 +0.2 4,378,602 + OKFHMN_22510 0.48 +1.1 4,378,602 + OKFHMN_22510 0.48 +0.1 4,378,748 + OKFHMN_22510 0.69 -1.7 4,379,055 + +0.1 4,379,074 + +1.1 4,379,268 - oafA OKFHMN_22515 0.26 -1.0 4,379,441 - oafA OKFHMN_22515 0.42 +0.1 4,379,459 + oafA OKFHMN_22515 0.43 +0.2 4,379,459 + oafA OKFHMN_22515 0.43 -1.3 4,379,702 - oafA OKFHMN_22515 0.65 +1.1 4,379,702 - oafA OKFHMN_22515 0.65 -0.9
Or see this region's nucleotide sequence