Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21270

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntclpB and 16S_rrna are separated by 442 nucleotides16S_rrna and Glu_trna are separated by 85 nucleotidesGlu_trna and 23S_rrna are separated by 193 nucleotides OKFHMN_21265: clpB - ATP-dependent chaperone ClpB, at 4,120,287 to 4,122,860 clpB OKFHMN_21270: 16S_rrna - 16S ribosomal RNA, at 4,123,303 to 4,124,844 _rrna OKFHMN_21275: Glu_trna - tRNA-Glu(ttc), at 4,124,930 to 4,125,005 _trna OKFHMN_21285: 23S_rrna - 23S ribosomal RNA, at 4,125,199 to 4,128,103 _rrna Position (kb) 4123 4124 4125Strain fitness (log2 ratio) -1 0 1 2at 4122.364 kb on + strand, within clpBat 4122.419 kb on + strand, within clpBat 4122.440 kb on + strand, within clpBat 4122.486 kb on + strand, within clpBat 4122.486 kb on + strand, within clpBat 4122.520 kb on + strand, within clpBat 4122.521 kb on - strand, within clpBat 4122.521 kb on - strand, within clpBat 4122.657 kb on + strandat 4122.720 kb on + strandat 4122.721 kb on - strandat 4122.721 kb on - strandat 4122.721 kb on - strandat 4122.721 kb on - strandat 4122.784 kb on + strandat 4122.784 kb on + strandat 4122.784 kb on + strandat 4122.816 kb on - strandat 4122.816 kb on - strandat 4122.865 kb on - strandat 4122.897 kb on + strandat 4122.898 kb on - strandat 4122.898 kb on - strandat 4122.919 kb on - strandat 4122.919 kb on - strandat 4122.963 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
4,122,364 + clpB OKFHMN_21265 0.81 -0.7
4,122,419 + clpB OKFHMN_21265 0.83 +0.4
4,122,440 + clpB OKFHMN_21265 0.84 +1.6
4,122,486 + clpB OKFHMN_21265 0.85 -0.8
4,122,486 + clpB OKFHMN_21265 0.85 +0.7
4,122,520 + clpB OKFHMN_21265 0.87 -1.2
4,122,521 - clpB OKFHMN_21265 0.87 +0.6
4,122,521 - clpB OKFHMN_21265 0.87 -1.2
4,122,657 + -0.7
4,122,720 + +0.3
4,122,721 - +0.1
4,122,721 - +0.6
4,122,721 - +1.1
4,122,721 - +0.2
4,122,784 + -0.6
4,122,784 + -0.6
4,122,784 + -0.6
4,122,816 - +0.5
4,122,816 - +0.0
4,122,865 - +0.2
4,122,897 + +0.8
4,122,898 - -0.0
4,122,898 - +1.3
4,122,919 - -0.6
4,122,919 - +2.4
4,122,963 + -0.5

Or see this region's nucleotide sequence