Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21045

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_21025 and OKFHMN_21030 are separated by 90 nucleotidesOKFHMN_21030 and OKFHMN_21045 are separated by 240 nucleotidesOKFHMN_21045 and OKFHMN_21050 are separated by 149 nucleotidesOKFHMN_21050 and OKFHMN_21055 are separated by 4 nucleotidesOKFHMN_21055 and rrrD are separated by 50 nucleotides OKFHMN_21025: OKFHMN_21025 - Membrane protein, at 4,087,070 to 4,087,813 _21025 OKFHMN_21030: OKFHMN_21030 - hypothetical protein, at 4,087,904 to 4,088,233 _21030 OKFHMN_21045: OKFHMN_21045 - DUF1737 domain-containing protein, at 4,088,474 to 4,090,327 _21045 OKFHMN_21050: OKFHMN_21050 - holin, at 4,090,477 to 4,090,692 _21050 OKFHMN_21055: OKFHMN_21055 - DUF1327 domain-containing protein, at 4,090,697 to 4,091,041 _21055 OKFHMN_21060: rrrD - lysozyme, at 4,091,092 to 4,091,322 rrrD Position (kb) 4088 4089 4090 4091Strain fitness (log2 ratio) -1 0 1at 4091.271 kb on + strand, within rrrDat 4091.271 kb on + strand, within rrrD

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,091,271 + rrrD OKFHMN_21060 0.77 -0.1
4,091,271 + rrrD OKFHMN_21060 0.77 -0.7

Or see this region's nucleotide sequence