Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20970

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_20965 and OKFHMN_20970 overlap by 4 nucleotidesOKFHMN_20970 and OKFHMN_20975 are separated by 0 nucleotidesOKFHMN_20975 and OKFHMN_20980 are separated by 97 nucleotides OKFHMN_20965: OKFHMN_20965 - integrase, at 4,077,465 to 4,078,778 _20965 OKFHMN_20970: OKFHMN_20970 - DNA-binding protein, at 4,078,775 to 4,080,406 _20970 OKFHMN_20975: OKFHMN_20975 - hypothetical protein, at 4,080,407 to 4,080,805 _20975 OKFHMN_20980: OKFHMN_20980 - hypothetical protein, at 4,080,903 to 4,081,316 _20980 Position (kb) 4078 4079 4080 4081Strain fitness (log2 ratio) -2 -1 0 1 2at 4078.259 kb on + strand, within OKFHMN_20965at 4078.559 kb on - strand, within OKFHMN_20965at 4078.637 kb on + strand, within OKFHMN_20965at 4078.914 kb on + strandat 4078.919 kb on - strandat 4079.151 kb on + strand, within OKFHMN_20970at 4079.413 kb on - strand, within OKFHMN_20970at 4079.413 kb on - strand, within OKFHMN_20970at 4080.037 kb on + strand, within OKFHMN_20970at 4080.184 kb on + strand, within OKFHMN_20970at 4080.199 kb on - strand, within OKFHMN_20970at 4080.549 kb on + strand, within OKFHMN_20975at 4080.612 kb on + strand, within OKFHMN_20975at 4080.779 kb on - strandat 4081.117 kb on - strand, within OKFHMN_20980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
4,078,259 + OKFHMN_20965 0.60 +0.7
4,078,559 - OKFHMN_20965 0.83 +1.7
4,078,637 + OKFHMN_20965 0.89 +0.6
4,078,914 + +0.8
4,078,919 - -2.7
4,079,151 + OKFHMN_20970 0.23 -0.4
4,079,413 - OKFHMN_20970 0.39 -0.5
4,079,413 - OKFHMN_20970 0.39 +0.3
4,080,037 + OKFHMN_20970 0.77 +1.1
4,080,184 + OKFHMN_20970 0.86 -0.8
4,080,199 - OKFHMN_20970 0.87 -0.2
4,080,549 + OKFHMN_20975 0.36 -2.0
4,080,612 + OKFHMN_20975 0.51 +2.1
4,080,779 - +0.6
4,081,117 - OKFHMN_20980 0.52 -0.6

Or see this region's nucleotide sequence