Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20040

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,890,562	-	pulJ	OKFHMN_20025	0.51	+0.5
3,890,562	-	pulJ	OKFHMN_20025	0.51	+1.3
3,890,699	+	pulJ	OKFHMN_20025	0.75	+0.2
3,890,720	-	pulJ	OKFHMN_20025	0.79	-0.5
3,890,762	+	pulJ	OKFHMN_20025	0.87	-0.7
3,890,811	+				-0.1
3,890,811	+				-1.6
3,890,812	-				-1.4
3,890,901	+	ygdB	OKFHMN_20030	0.16	-2.3
3,891,049	-	ygdB	OKFHMN_20030	0.53	+0.4
3,891,108	+	ygdB	OKFHMN_20030	0.67	-0.2
3,891,111	+	ygdB	OKFHMN_20030	0.68	+0.2
3,891,111	+	ygdB	OKFHMN_20030	0.68	+0.6
3,891,111	+	ygdB	OKFHMN_20030	0.68	-2.4
3,891,112	-	ygdB	OKFHMN_20030	0.68	+1.0
3,891,226	-				+0.5
3,891,336	-	ppdC	OKFHMN_20035	0.34	-1.7
3,891,349	-	ppdC	OKFHMN_20035	0.38	-1.4
3,891,982	+	recC	OKFHMN_20040	0.12	-0.9
3,894,964	-				+0.3
3,894,968	+				+0.5
3,894,998	+				+0.2
3,894,999	-				+0.6
3,895,000	+				-0.0
3,895,000	+				+0.3
3,895,000	+				+0.9
3,895,001	-				+0.4
3,895,002	+				+0.1
3,895,002	+				-0.9
3,895,002	+				-0.4
3,895,002	+				+1.0
3,895,003	-				+0.9
3,895,008	+				+1.0
3,895,134	+				-1.2
3,895,135	-				-0.8
3,895,143	+				-0.2
3,895,143	+				+2.1
3,895,143	+				+0.3
3,895,144	-				+0.7
3,895,164	+				+0.0
3,895,165	-				+0.0
3,895,219	+				-0.8
3,895,220	-				-0.7
3,895,243	+				-1.3
3,895,245	+				+0.0
3,895,245	+				+0.6
3,895,246	-				+0.5
3,895,370	+				+1.6
3,895,371	-				-0.3
3,895,381	+				-1.4
3,895,382	-				+0.0
3,895,382	-				-1.3
3,895,454	-	ptrA	OKFHMN_20045	0.12	+1.1
3,895,531	-	ptrA	OKFHMN_20045	0.15	-0.4
3,895,595	-	ptrA	OKFHMN_20045	0.17	+0.4
3,895,708	+	ptrA	OKFHMN_20045	0.21	+1.5
3,895,778	+	ptrA	OKFHMN_20045	0.23	+0.1
3,895,779	-	ptrA	OKFHMN_20045	0.23	+0.5
3,895,782	-	ptrA	OKFHMN_20045	0.23	-0.4
3,895,816	+	ptrA	OKFHMN_20045	0.25	+0.2