Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19020

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,692,105	-	hybB	OKFHMN_19015	0.19	-0.4
3,692,106	+	hybB	OKFHMN_19015	0.19	-0.4
3,692,127	+	hybB	OKFHMN_19015	0.21	-1.3
3,692,128	-	hybB	OKFHMN_19015	0.21	-1.4
3,692,172	+	hybB	OKFHMN_19015	0.25	-0.9
3,692,230	-	hybB	OKFHMN_19015	0.30	-2.0
3,692,230	-	hybB	OKFHMN_19015	0.30	+0.1
3,692,288	+	hybB	OKFHMN_19015	0.35	+0.6
3,692,298	+	hybB	OKFHMN_19015	0.36	+0.4
3,692,299	-	hybB	OKFHMN_19015	0.36	+1.1
3,692,466	+	hybB	OKFHMN_19015	0.50	-0.2
3,692,684	+	hybB	OKFHMN_19015	0.68	+0.0
3,692,684	+	hybB	OKFHMN_19015	0.68	+0.2
3,692,684	+	hybB	OKFHMN_19015	0.68	+0.5
3,692,685	-	hybB	OKFHMN_19015	0.68	-0.0
3,692,685	-	hybB	OKFHMN_19015	0.68	-0.0
3,692,685	-	hybB	OKFHMN_19015	0.68	-0.9
3,692,801	+	hybB	OKFHMN_19015	0.78	+0.1
3,692,802	-	hybB	OKFHMN_19015	0.78	-0.9
3,692,846	-	hybB	OKFHMN_19015	0.82	+0.2
3,692,846	-	hybB	OKFHMN_19015	0.82	+0.5
3,692,846	-	hybB	OKFHMN_19015	0.82	-0.9
3,692,846	-	hybB	OKFHMN_19015	0.82	+0.8
3,692,980	+				+0.8
3,693,001	+				+0.2
3,693,001	+				-1.0
3,693,029	+				+0.3
3,693,029	+				-1.1
3,693,067	+				+0.2
3,693,071	-				-1.6
3,693,102	+				-2.3
3,693,102	+				+1.7
3,693,103	-				-1.5
3,693,103	-				-0.3
3,693,229	+	hybC	OKFHMN_19020	0.10	+0.7
3,693,240	+	hybC	OKFHMN_19020	0.11	-0.0
3,693,241	-	hybC	OKFHMN_19020	0.11	+2.3
3,693,244	+	hybC	OKFHMN_19020	0.11	+1.3
3,693,244	+	hybC	OKFHMN_19020	0.11	+1.2
3,693,245	-	hybC	OKFHMN_19020	0.11	-1.1
3,693,245	-	hybC	OKFHMN_19020	0.11	+0.5
3,693,245	-	hybC	OKFHMN_19020	0.11	-0.5
3,693,245	-	hybC	OKFHMN_19020	0.11	+0.3
3,693,247	+	hybC	OKFHMN_19020	0.11	+0.1
3,693,320	+	hybC	OKFHMN_19020	0.16	-0.2
3,693,321	-	hybC	OKFHMN_19020	0.16	-0.9
3,693,321	-	hybC	OKFHMN_19020	0.16	-0.1
3,693,378	-	hybC	OKFHMN_19020	0.19	+2.8
3,693,623	+	hybC	OKFHMN_19020	0.33	-1.0
3,693,624	-	hybC	OKFHMN_19020	0.34	+0.8
3,693,776	+	hybC	OKFHMN_19020	0.42	-1.1
3,693,777	-	hybC	OKFHMN_19020	0.42	+1.2
3,693,777	-	hybC	OKFHMN_19020	0.42	-0.2
3,693,824	+	hybC	OKFHMN_19020	0.45	-0.3
3,693,825	-	hybC	OKFHMN_19020	0.45	+0.2
3,693,960	-	hybC	OKFHMN_19020	0.53	-1.1
3,694,016	+	hybC	OKFHMN_19020	0.57	+0.6
3,694,058	+	hybC	OKFHMN_19020	0.59	+0.1
3,694,059	-	hybC	OKFHMN_19020	0.59	-1.3
3,694,059	-	hybC	OKFHMN_19020	0.59	-0.7
3,694,094	-	hybC	OKFHMN_19020	0.61	-1.3
3,694,109	+	hybC	OKFHMN_19020	0.62	+0.2
3,694,198	+	hybC	OKFHMN_19020	0.67	+0.8
3,694,199	-	hybC	OKFHMN_19020	0.67	-3.0
3,694,199	-	hybC	OKFHMN_19020	0.67	+0.5
3,694,379	+	hybC	OKFHMN_19020	0.78	+0.7
3,694,492	+	hybC	OKFHMN_19020	0.84	-0.2
3,694,539	-	hybC	OKFHMN_19020	0.87	+0.4
3,694,539	-	hybC	OKFHMN_19020	0.87	-0.1
3,694,539	-	hybC	OKFHMN_19020	0.87	-0.4
3,694,539	-	hybC	OKFHMN_19020	0.87	+0.0
3,694,539	-	hybC	OKFHMN_19020	0.87	-0.2
3,694,579	+	hybC	OKFHMN_19020	0.90	+0.3
3,694,625	-				-1.0
3,694,646	-				-1.7
3,694,666	+				-0.5
3,694,667	-				+0.2
3,694,667	-				+0.2
3,694,755	-				+0.3
3,694,761	+				-0.9
3,694,858	+	hybD	OKFHMN_19025	0.21	+0.1
3,694,858	+	hybD	OKFHMN_19025	0.21	+0.1
3,694,859	-	hybD	OKFHMN_19025	0.21	+0.5
3,695,257	-				-0.5
3,695,289	+				+0.6
3,695,289	+				-0.5
3,695,555	+	hybE	OKFHMN_19030	0.64	-0.3
3,695,556	-	hybE	OKFHMN_19030	0.64	+1.2