Strain Fitness in Escherichia coli ECRC100 around OKFHMN_17600

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt16S_rrna and Ile_trna are separated by 68 nucleotidesIle_trna and Ala_trna are separated by 42 nucleotidesAla_trna and 23S_rrna are separated by 183 nucleotides23S_rrna and 5S_rrna are separated by 94 nucleotides5S_rrna and Thr_trna are separated by 14 nucleotidesThr_trna and 5S_rrna are separated by 39 nucleotides5S_rrna and yhdZ are separated by 230 nucleotides OKFHMN_17580: 16S_rrna - 16S ribosomal RNA, at 3,412,621 to 3,414,162 _rrna OKFHMN_17585: Ile_trna - tRNA-Ile(gat), at 3,414,231 to 3,414,307 _trna OKFHMN_17590: Ala_trna - tRNA-Ala(tgc), at 3,414,350 to 3,414,425 _trna OKFHMN_17600: 23S_rrna - 23S ribosomal RNA, at 3,414,609 to 3,417,511 _rrna OKFHMN_17605: 5S_rrna - 5S ribosomal RNA, at 3,417,606 to 3,417,721 _rrna OKFHMN_17610: Thr_trna - tRNA-Thr(ggt), at 3,417,736 to 3,417,811 _trna OKFHMN_17615: 5S_rrna - 5S ribosomal RNA, at 3,417,851 to 3,417,966 _rrna OKFHMN_17620: yhdZ - Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ, at 3,418,197 to 3,418,955 yhdZ Position (kb) 3414 3415 3416 3417 3418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3417.817 kb on + strandat 3417.817 kb on + strandat 3418.014 kb on - strandat 3418.014 kb on - strandat 3418.173 kb on + strandat 3418.188 kb on - strandat 3418.230 kb on - strandat 3418.242 kb on - strandat 3418.392 kb on - strand, within yhdZat 3418.467 kb on - strand, within yhdZ

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,417,817 + +1.7
3,417,817 + +0.4
3,418,014 - -0.0
3,418,014 - +1.4
3,418,173 + +2.1
3,418,188 - +0.5
3,418,230 - -1.9
3,418,242 - +0.2
3,418,392 - yhdZ OKFHMN_17620 0.26 -3.4
3,418,467 - yhdZ OKFHMN_17620 0.36 -2.3

Or see this region's nucleotide sequence