Strain Fitness in Escherichia coli ECRC100 around OKFHMN_16710

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntftsY and ftsE are separated by 2 nucleotidesftsE and ftsX overlap by 8 nucleotidesftsX and rpoH are separated by 244 nucleotides OKFHMN_16700: ftsY - signal recognition particle-docking protein FtsY, at 3,251,591 to 3,253,087 ftsY OKFHMN_16705: ftsE - cell division ATP-binding protein FtsE, at 3,253,090 to 3,253,758 ftsE OKFHMN_16710: ftsX - permease-like cell division protein FtsX, at 3,253,751 to 3,254,809 ftsX OKFHMN_16715: rpoH - RNA polymerase sigma factor RpoH, at 3,255,054 to 3,255,908 rpoH Position (kb) 3253 3254 3255Strain fitness (log2 ratio) -3 -2 -1 0 1at 3254.787 kb on + strandat 3254.811 kb on - strandat 3254.811 kb on - strandat 3254.821 kb on + strandat 3254.821 kb on + strandat 3254.823 kb on + strandat 3254.823 kb on + strandat 3254.823 kb on + strandat 3254.824 kb on - strandat 3254.824 kb on - strandat 3254.894 kb on - strandat 3254.894 kb on - strandat 3254.894 kb on - strandat 3254.991 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
3,254,787 + -0.2
3,254,811 - -0.5
3,254,811 - -0.4
3,254,821 + +0.6
3,254,821 + +1.5
3,254,823 + -0.4
3,254,823 + -0.2
3,254,823 + -0.6
3,254,824 - -1.5
3,254,824 - -0.3
3,254,894 - -1.3
3,254,894 - -3.2
3,254,894 - +0.1
3,254,991 + -0.1

Or see this region's nucleotide sequence