Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14855

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglmS and lpfA2 are separated by 699 nucleotideslpfA2 and OKFHMN_14860 are separated by 103 nucleotidesOKFHMN_14860 and fimD are separated by 323 nucleotides OKFHMN_14850: glmS - glutamine--fructose-6-phosphate transaminase (isomerizing), at 2,867,967 to 2,869,796 glmS OKFHMN_14855: lpfA2 - long polar fimbria major subunit LpfA2, at 2,870,496 to 2,871,098 lpfA2 OKFHMN_14860: OKFHMN_14860 - fimbrial chaperone protein, at 2,871,202 to 2,871,585 _14860 OKFHMN_14865: fimD - fimbrial protein, at 2,871,909 to 2,874,443 fimD Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2869.795 kb on - strandat 2869.846 kb on + strandat 2869.856 kb on - strandat 2869.864 kb on - strandat 2870.041 kb on + strandat 2870.516 kb on - strandat 2870.606 kb on + strand, within lpfA2at 2870.631 kb on - strand, within lpfA2at 2870.790 kb on - strand, within lpfA2at 2870.828 kb on + strand, within lpfA2at 2870.828 kb on + strand, within lpfA2at 2870.861 kb on + strand, within lpfA2at 2870.862 kb on - strand, within lpfA2at 2870.877 kb on - strand, within lpfA2at 2870.911 kb on + strand, within lpfA2at 2870.928 kb on - strand, within lpfA2at 2870.928 kb on - strand, within lpfA2at 2870.928 kb on - strand, within lpfA2at 2870.939 kb on + strand, within lpfA2at 2870.993 kb on + strand, within lpfA2at 2870.993 kb on + strand, within lpfA2at 2871.201 kb on + strandat 2871.215 kb on + strandat 2871.904 kb on + strandat 2871.905 kb on - strandat 2871.949 kb on + strandat 2871.949 kb on + strandat 2871.949 kb on + strandat 2871.967 kb on + strandat 2872.083 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,869,795 - -1.1
2,869,846 + -0.4
2,869,856 - -0.3
2,869,864 - +0.6
2,870,041 + +0.1
2,870,516 - -0.7
2,870,606 + lpfA2 OKFHMN_14855 0.18 -1.1
2,870,631 - lpfA2 OKFHMN_14855 0.22 -0.2
2,870,790 - lpfA2 OKFHMN_14855 0.49 +0.9
2,870,828 + lpfA2 OKFHMN_14855 0.55 -0.0
2,870,828 + lpfA2 OKFHMN_14855 0.55 +0.2
2,870,861 + lpfA2 OKFHMN_14855 0.61 -3.5
2,870,862 - lpfA2 OKFHMN_14855 0.61 +0.4
2,870,877 - lpfA2 OKFHMN_14855 0.63 +0.1
2,870,911 + lpfA2 OKFHMN_14855 0.69 -0.0
2,870,928 - lpfA2 OKFHMN_14855 0.72 -0.0
2,870,928 - lpfA2 OKFHMN_14855 0.72 +0.8
2,870,928 - lpfA2 OKFHMN_14855 0.72 -0.4
2,870,939 + lpfA2 OKFHMN_14855 0.73 -2.6
2,870,993 + lpfA2 OKFHMN_14855 0.82 -0.8
2,870,993 + lpfA2 OKFHMN_14855 0.82 +0.6
2,871,201 + +0.6
2,871,215 + -0.6
2,871,904 + -0.4
2,871,905 - +2.2
2,871,949 + +0.0
2,871,949 + +0.8
2,871,949 + -2.7
2,871,967 + -0.1
2,872,083 + +0.4

Or see this region's nucleotide sequence