Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpA and atpG are separated by 50 nucleotides atpG and atpD are separated by 26 nucleotides atpD and atpC are separated by 20 nucleotides atpC and glmU are separated by 351 nucleotides
OKFHMN_14820: atpA - F0F1 ATP synthase subunit alpha, at 2,861,779 to 2,863,320
atpA
OKFHMN_14825: atpG - F0F1 ATP synthase subunit gamma, at 2,863,371 to 2,864,234
atpG
OKFHMN_14830: atpD - F0F1 ATP synthase subunit beta, at 2,864,261 to 2,865,643
atpD
OKFHMN_14835: atpC - F0F1 ATP synthase subunit epsilon, at 2,865,664 to 2,866,083
atpC
OKFHMN_14845: glmU - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 2,866,435 to 2,867,805
glmU
Position (kb)
2864
2865
2866 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2864.232 kb on + strand at 2864.241 kb on + strand at 2865.963 kb on + strand, within atpC at 2866.158 kb on - strand at 2866.168 kb on + strand at 2866.169 kb on - strand at 2866.181 kb on + strand at 2866.181 kb on + strand at 2866.183 kb on + strand at 2866.183 kb on + strand at 2866.184 kb on - strand at 2866.184 kb on - strand at 2866.184 kb on - strand at 2866.249 kb on - strand at 2866.249 kb on - strand at 2866.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 2,864,232 + -3.1 2,864,241 + -3.4 2,865,963 + atpC OKFHMN_14835 0.71 -4.0 2,866,158 - -1.3 2,866,168 + +0.3 2,866,169 - +0.1 2,866,181 + +0.8 2,866,181 + -0.3 2,866,183 + -0.1 2,866,183 + -1.0 2,866,184 - +0.7 2,866,184 - -3.1 2,866,184 - -0.6 2,866,249 - +0.0 2,866,249 - +0.3 2,866,419 + +0.1
Or see this region's nucleotide sequence