Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14690

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthdfR and Trp_trna are separated by 95 nucleotidesTrp_trna and Asp_trna are separated by 8 nucleotidesAsp_trna and 5S_rrna are separated by 54 nucleotides5S_rrna and 23S_rrna are separated by 94 nucleotides OKFHMN_14675: hdfR - HTH-type transcriptional regulator HdfR, at 2,833,668 to 2,834,507 hdfR OKFHMN_14680: Trp_trna - tRNA-Trp(cca), at 2,834,603 to 2,834,678 _trna OKFHMN_14685: Asp_trna - tRNA-Asp(gtc), at 2,834,687 to 2,834,763 _trna OKFHMN_14690: 5S_rrna - 5S ribosomal RNA, at 2,834,818 to 2,834,933 _rrna OKFHMN_14695: 23S_rrna - 23S ribosomal RNA, at 2,835,028 to 2,837,932 _rrna Position (kb) 2834 2835Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2833.867 kb on - strand, within hdfRat 2833.867 kb on - strand, within hdfRat 2833.919 kb on + strand, within hdfRat 2833.919 kb on + strand, within hdfRat 2833.920 kb on - strand, within hdfRat 2833.932 kb on - strand, within hdfRat 2833.973 kb on + strand, within hdfRat 2833.973 kb on + strand, within hdfRat 2833.973 kb on + strand, within hdfRat 2833.974 kb on - strand, within hdfRat 2833.974 kb on - strand, within hdfRat 2833.974 kb on - strand, within hdfRat 2833.974 kb on - strand, within hdfRat 2833.974 kb on - strand, within hdfRat 2833.979 kb on + strand, within hdfRat 2833.979 kb on + strand, within hdfRat 2834.022 kb on - strand, within hdfRat 2834.030 kb on - strand, within hdfRat 2834.102 kb on + strand, within hdfRat 2834.102 kb on + strand, within hdfRat 2834.135 kb on + strand, within hdfRat 2834.138 kb on + strand, within hdfRat 2834.138 kb on + strand, within hdfRat 2834.174 kb on + strand, within hdfRat 2834.175 kb on - strand, within hdfRat 2834.207 kb on + strand, within hdfRat 2834.208 kb on - strand, within hdfRat 2834.211 kb on + strand, within hdfRat 2834.211 kb on + strand, within hdfRat 2834.211 kb on + strand, within hdfRat 2834.212 kb on - strand, within hdfRat 2834.431 kb on + strandat 2834.450 kb on + strandat 2834.457 kb on - strandat 2834.473 kb on + strandat 2834.503 kb on - strandat 2834.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,833,867 - hdfR OKFHMN_14675 0.24 -0.7
2,833,867 - hdfR OKFHMN_14675 0.24 -1.5
2,833,919 + hdfR OKFHMN_14675 0.30 -0.7
2,833,919 + hdfR OKFHMN_14675 0.30 -1.1
2,833,920 - hdfR OKFHMN_14675 0.30 -1.3
2,833,932 - hdfR OKFHMN_14675 0.31 -0.4
2,833,973 + hdfR OKFHMN_14675 0.36 -0.0
2,833,973 + hdfR OKFHMN_14675 0.36 -0.9
2,833,973 + hdfR OKFHMN_14675 0.36 -2.5
2,833,974 - hdfR OKFHMN_14675 0.36 -2.3
2,833,974 - hdfR OKFHMN_14675 0.36 +0.4
2,833,974 - hdfR OKFHMN_14675 0.36 +0.4
2,833,974 - hdfR OKFHMN_14675 0.36 -3.1
2,833,974 - hdfR OKFHMN_14675 0.36 -1.7
2,833,979 + hdfR OKFHMN_14675 0.37 -0.4
2,833,979 + hdfR OKFHMN_14675 0.37 -0.5
2,834,022 - hdfR OKFHMN_14675 0.42 +0.0
2,834,030 - hdfR OKFHMN_14675 0.43 +1.9
2,834,102 + hdfR OKFHMN_14675 0.52 -1.5
2,834,102 + hdfR OKFHMN_14675 0.52 +0.4
2,834,135 + hdfR OKFHMN_14675 0.56 +1.0
2,834,138 + hdfR OKFHMN_14675 0.56 -2.8
2,834,138 + hdfR OKFHMN_14675 0.56 -3.2
2,834,174 + hdfR OKFHMN_14675 0.60 -1.2
2,834,175 - hdfR OKFHMN_14675 0.60 -3.5
2,834,207 + hdfR OKFHMN_14675 0.64 -1.2
2,834,208 - hdfR OKFHMN_14675 0.64 -1.9
2,834,211 + hdfR OKFHMN_14675 0.65 -0.3
2,834,211 + hdfR OKFHMN_14675 0.65 +0.5
2,834,211 + hdfR OKFHMN_14675 0.65 -1.2
2,834,212 - hdfR OKFHMN_14675 0.65 -3.2
2,834,431 + -1.4
2,834,450 + -4.4
2,834,457 - -0.6
2,834,473 + -0.7
2,834,503 - -1.7
2,834,506 - +1.1

Or see this region's nucleotide sequence