Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12310

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntqueG and yjeV overlap by 18 nucleotidesyjeV and Gly_trna are separated by 233 nucleotidesGly_trna and Gly_trna are separated by 35 nucleotidesGly_trna and Gly_trna are separated by 35 nucleotidesGly_trna and Gly_trna are separated by 36 nucleotidesGly_trna and orn are separated by 210 nucleotidesorn and rsgA are separated by 94 nucleotides OKFHMN_12285: queG - tRNA epoxyqueuosine(34) reductase QueG, at 2,353,734 to 2,354,873 queG OKFHMN_12290: yjeV - Uncharacterized protein YjeV, at 2,354,856 to 2,354,909 yjeV OKFHMN_12295: Gly_trna - tRNA-Gly(gcc), at 2,355,143 to 2,355,218 _trna OKFHMN_12300: Gly_trna - tRNA-Gly(gcc), at 2,355,254 to 2,355,329 _trna OKFHMN_12305: Gly_trna - tRNA-Gly(gcc), at 2,355,365 to 2,355,440 _trna OKFHMN_12310: Gly_trna - tRNA-Gly(gcc), at 2,355,477 to 2,355,552 _trna OKFHMN_12315: orn - oligoribonuclease, at 2,355,763 to 2,356,308 orn OKFHMN_12320: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 2,356,403 to 2,357,455 rsgA Position (kb) 2355 2356Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2354.552 kb on - strand, within queGat 2354.575 kb on + strand, within queGat 2354.634 kb on - strand, within queGat 2354.660 kb on + strand, within queGat 2354.674 kb on + strand, within queGat 2354.674 kb on + strand, within queGat 2354.755 kb on + strand, within queGat 2354.976 kb on + strandat 2354.977 kb on - strandat 2355.101 kb on - strandat 2355.555 kb on - strandat 2355.555 kb on - strandat 2355.555 kb on - strandat 2356.338 kb on - strandat 2356.338 kb on - strandat 2356.338 kb on - strandat 2356.338 kb on - strandat 2356.338 kb on - strandat 2356.358 kb on - strandat 2356.358 kb on - strandat 2356.358 kb on - strandat 2356.362 kb on + strandat 2356.362 kb on + strandat 2356.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,354,552 - queG OKFHMN_12285 0.72 +0.7
2,354,575 + queG OKFHMN_12285 0.74 -0.7
2,354,634 - queG OKFHMN_12285 0.79 -0.2
2,354,660 + queG OKFHMN_12285 0.81 -3.3
2,354,674 + queG OKFHMN_12285 0.82 -0.6
2,354,674 + queG OKFHMN_12285 0.82 +0.3
2,354,755 + queG OKFHMN_12285 0.90 +0.2
2,354,976 + +1.2
2,354,977 - +1.0
2,355,101 - -1.4
2,355,555 - -1.7
2,355,555 - +0.2
2,355,555 - +0.5
2,356,338 - -0.4
2,356,338 - -2.1
2,356,338 - -0.2
2,356,338 - -0.1
2,356,338 - +2.3
2,356,358 - +0.7
2,356,358 - +1.3
2,356,358 - -3.5
2,356,362 + -2.8
2,356,362 + -0.2
2,356,362 + +0.8

Or see this region's nucleotide sequence