Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10745

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsgrR and OKFHMN_10745 are separated by 155 nucleotidesOKFHMN_10745 and espY2 overlap by 35 nucleotidesespY2 and thiB are separated by 371 nucleotides OKFHMN_10740: sgrR - DNA-binding transcriptional regulator SgrR, at 2,020,064 to 2,021,722 sgrR OKFHMN_10745: OKFHMN_10745 - hypothetical protein, at 2,021,878 to 2,021,985 _10745 OKFHMN_10750: espY2 - T3SS effector EspY2, at 2,021,951 to 2,022,520 espY2 OKFHMN_10755: thiB - thiamine ABC transporter substrate binding subunit, at 2,022,892 to 2,023,875 thiB Position (kb) 2021 2022Strain fitness (log2 ratio) -3 -2 -1 0 1at 2020.948 kb on - strand, within sgrRat 2020.960 kb on + strand, within sgrRat 2021.014 kb on - strand, within sgrRat 2021.070 kb on - strand, within sgrRat 2021.070 kb on - strand, within sgrRat 2021.072 kb on + strand, within sgrRat 2021.072 kb on + strand, within sgrRat 2021.072 kb on + strand, within sgrRat 2021.076 kb on + strand, within sgrRat 2021.077 kb on - strand, within sgrRat 2021.135 kb on + strand, within sgrRat 2021.136 kb on - strand, within sgrRat 2021.136 kb on - strand, within sgrRat 2021.136 kb on - strand, within sgrRat 2021.152 kb on + strand, within sgrRat 2021.152 kb on + strand, within sgrRat 2021.153 kb on - strand, within sgrRat 2021.162 kb on + strand, within sgrRat 2021.163 kb on - strand, within sgrRat 2021.205 kb on - strand, within sgrRat 2021.241 kb on + strand, within sgrRat 2021.289 kb on - strand, within sgrRat 2021.381 kb on + strand, within sgrRat 2021.382 kb on - strand, within sgrRat 2021.382 kb on - strand, within sgrRat 2021.425 kb on + strand, within sgrRat 2021.503 kb on + strand, within sgrRat 2021.608 kb on + strandat 2021.608 kb on + strandat 2021.645 kb on - strandat 2021.806 kb on + strandat 2022.035 kb on - strand, within espY2at 2022.047 kb on - strand, within espY2at 2022.100 kb on + strand, within espY2at 2022.101 kb on - strand, within espY2at 2022.137 kb on + strand, within espY2at 2022.274 kb on - strand, within espY2at 2022.350 kb on - strand, within espY2at 2022.383 kb on + strand, within espY2at 2022.384 kb on - strand, within espY2at 2022.397 kb on + strand, within espY2at 2022.451 kb on + strand, within espY2at 2022.493 kb on + strandat 2022.494 kb on - strandat 2022.513 kb on - strandat 2022.556 kb on - strandat 2022.574 kb on + strandat 2022.574 kb on + strandat 2022.610 kb on + strandat 2022.616 kb on - strandat 2022.616 kb on - strandat 2022.616 kb on - strandat 2022.620 kb on - strandat 2022.630 kb on + strandat 2022.631 kb on - strandat 2022.666 kb on + strandat 2022.675 kb on - strandat 2022.698 kb on - strandat 2022.712 kb on + strandat 2022.723 kb on + strandat 2022.965 kb on - strandat 2022.967 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
2,020,948 - sgrR OKFHMN_10740 0.53 +0.9
2,020,960 + sgrR OKFHMN_10740 0.54 -0.4
2,021,014 - sgrR OKFHMN_10740 0.57 +0.2
2,021,070 - sgrR OKFHMN_10740 0.61 -0.8
2,021,070 - sgrR OKFHMN_10740 0.61 +0.5
2,021,072 + sgrR OKFHMN_10740 0.61 +1.2
2,021,072 + sgrR OKFHMN_10740 0.61 -0.3
2,021,072 + sgrR OKFHMN_10740 0.61 +0.6
2,021,076 + sgrR OKFHMN_10740 0.61 -2.9
2,021,077 - sgrR OKFHMN_10740 0.61 -0.5
2,021,135 + sgrR OKFHMN_10740 0.65 -0.6
2,021,136 - sgrR OKFHMN_10740 0.65 +0.1
2,021,136 - sgrR OKFHMN_10740 0.65 +0.3
2,021,136 - sgrR OKFHMN_10740 0.65 -0.3
2,021,152 + sgrR OKFHMN_10740 0.66 -1.1
2,021,152 + sgrR OKFHMN_10740 0.66 -0.0
2,021,153 - sgrR OKFHMN_10740 0.66 +1.5
2,021,162 + sgrR OKFHMN_10740 0.66 +0.9
2,021,163 - sgrR OKFHMN_10740 0.66 -0.6
2,021,205 - sgrR OKFHMN_10740 0.69 -0.1
2,021,241 + sgrR OKFHMN_10740 0.71 +0.4
2,021,289 - sgrR OKFHMN_10740 0.74 -0.8
2,021,381 + sgrR OKFHMN_10740 0.79 +1.2
2,021,382 - sgrR OKFHMN_10740 0.79 +0.2
2,021,382 - sgrR OKFHMN_10740 0.79 +0.4
2,021,425 + sgrR OKFHMN_10740 0.82 +0.6
2,021,503 + sgrR OKFHMN_10740 0.87 +0.3
2,021,608 + +0.5
2,021,608 + -0.2
2,021,645 - +0.7
2,021,806 + +0.3
2,022,035 - espY2 OKFHMN_10750 0.15 +0.8
2,022,047 - espY2 OKFHMN_10750 0.17 -0.1
2,022,100 + espY2 OKFHMN_10750 0.26 +0.4
2,022,101 - espY2 OKFHMN_10750 0.26 -1.7
2,022,137 + espY2 OKFHMN_10750 0.33 +0.1
2,022,274 - espY2 OKFHMN_10750 0.57 -0.9
2,022,350 - espY2 OKFHMN_10750 0.70 +0.4
2,022,383 + espY2 OKFHMN_10750 0.76 -0.1
2,022,384 - espY2 OKFHMN_10750 0.76 -0.3
2,022,397 + espY2 OKFHMN_10750 0.78 -1.3
2,022,451 + espY2 OKFHMN_10750 0.88 -0.0
2,022,493 + +1.1
2,022,494 - +0.8
2,022,513 - +0.4
2,022,556 - -0.5
2,022,574 + +0.3
2,022,574 + +0.9
2,022,610 + -0.0
2,022,616 - +0.4
2,022,616 - -0.3
2,022,616 - +0.7
2,022,620 - +0.5
2,022,630 + -0.3
2,022,631 - -0.1
2,022,666 + -1.6
2,022,675 - +0.4
2,022,698 - -0.1
2,022,712 + +0.2
2,022,723 + +0.2
2,022,965 - -0.3
2,022,967 - +0.3

Or see this region's nucleotide sequence