Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sgrR and OKFHMN_10745 are separated by 155 nucleotides OKFHMN_10745 and espY2 overlap by 35 nucleotides espY2 and thiB are separated by 371 nucleotides
OKFHMN_10740: sgrR - DNA-binding transcriptional regulator SgrR, at 2,020,064 to 2,021,722
sgrR
OKFHMN_10745: OKFHMN_10745 - hypothetical protein, at 2,021,878 to 2,021,985
_10745
OKFHMN_10750: espY2 - T3SS effector EspY2, at 2,021,951 to 2,022,520
espY2
OKFHMN_10755: thiB - thiamine ABC transporter substrate binding subunit, at 2,022,892 to 2,023,875
thiB
Position (kb)
2021
2022 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2020.948 kb on - strand, within sgrR at 2020.960 kb on + strand, within sgrR at 2021.014 kb on - strand, within sgrR at 2021.070 kb on - strand, within sgrR at 2021.070 kb on - strand, within sgrR at 2021.072 kb on + strand, within sgrR at 2021.072 kb on + strand, within sgrR at 2021.072 kb on + strand, within sgrR at 2021.076 kb on + strand, within sgrR at 2021.077 kb on - strand, within sgrR at 2021.135 kb on + strand, within sgrR at 2021.136 kb on - strand, within sgrR at 2021.136 kb on - strand, within sgrR at 2021.136 kb on - strand, within sgrR at 2021.152 kb on + strand, within sgrR at 2021.152 kb on + strand, within sgrR at 2021.153 kb on - strand, within sgrR at 2021.162 kb on + strand, within sgrR at 2021.163 kb on - strand, within sgrR at 2021.205 kb on - strand, within sgrR at 2021.241 kb on + strand, within sgrR at 2021.289 kb on - strand, within sgrR at 2021.381 kb on + strand, within sgrR at 2021.382 kb on - strand, within sgrR at 2021.382 kb on - strand, within sgrR at 2021.425 kb on + strand, within sgrR at 2021.503 kb on + strand, within sgrR at 2021.608 kb on + strand at 2021.608 kb on + strand at 2021.645 kb on - strand at 2021.806 kb on + strand at 2022.035 kb on - strand, within espY2 at 2022.047 kb on - strand, within espY2 at 2022.100 kb on + strand, within espY2 at 2022.101 kb on - strand, within espY2 at 2022.137 kb on + strand, within espY2 at 2022.274 kb on - strand, within espY2 at 2022.350 kb on - strand, within espY2 at 2022.383 kb on + strand, within espY2 at 2022.384 kb on - strand, within espY2 at 2022.397 kb on + strand, within espY2 at 2022.451 kb on + strand, within espY2 at 2022.493 kb on + strand at 2022.494 kb on - strand at 2022.513 kb on - strand at 2022.556 kb on - strand at 2022.574 kb on + strand at 2022.574 kb on + strand at 2022.610 kb on + strand at 2022.616 kb on - strand at 2022.616 kb on - strand at 2022.616 kb on - strand at 2022.620 kb on - strand at 2022.630 kb on + strand at 2022.631 kb on - strand at 2022.666 kb on + strand at 2022.675 kb on - strand at 2022.698 kb on - strand at 2022.712 kb on + strand at 2022.723 kb on + strand at 2022.965 kb on - strand at 2022.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 2,020,948 - sgrR OKFHMN_10740 0.53 +0.9 2,020,960 + sgrR OKFHMN_10740 0.54 -0.4 2,021,014 - sgrR OKFHMN_10740 0.57 +0.2 2,021,070 - sgrR OKFHMN_10740 0.61 -0.8 2,021,070 - sgrR OKFHMN_10740 0.61 +0.5 2,021,072 + sgrR OKFHMN_10740 0.61 +1.2 2,021,072 + sgrR OKFHMN_10740 0.61 -0.3 2,021,072 + sgrR OKFHMN_10740 0.61 +0.6 2,021,076 + sgrR OKFHMN_10740 0.61 -2.9 2,021,077 - sgrR OKFHMN_10740 0.61 -0.5 2,021,135 + sgrR OKFHMN_10740 0.65 -0.6 2,021,136 - sgrR OKFHMN_10740 0.65 +0.1 2,021,136 - sgrR OKFHMN_10740 0.65 +0.3 2,021,136 - sgrR OKFHMN_10740 0.65 -0.3 2,021,152 + sgrR OKFHMN_10740 0.66 -1.1 2,021,152 + sgrR OKFHMN_10740 0.66 -0.0 2,021,153 - sgrR OKFHMN_10740 0.66 +1.5 2,021,162 + sgrR OKFHMN_10740 0.66 +0.9 2,021,163 - sgrR OKFHMN_10740 0.66 -0.6 2,021,205 - sgrR OKFHMN_10740 0.69 -0.1 2,021,241 + sgrR OKFHMN_10740 0.71 +0.4 2,021,289 - sgrR OKFHMN_10740 0.74 -0.8 2,021,381 + sgrR OKFHMN_10740 0.79 +1.2 2,021,382 - sgrR OKFHMN_10740 0.79 +0.2 2,021,382 - sgrR OKFHMN_10740 0.79 +0.4 2,021,425 + sgrR OKFHMN_10740 0.82 +0.6 2,021,503 + sgrR OKFHMN_10740 0.87 +0.3 2,021,608 + +0.5 2,021,608 + -0.2 2,021,645 - +0.7 2,021,806 + +0.3 2,022,035 - espY2 OKFHMN_10750 0.15 +0.8 2,022,047 - espY2 OKFHMN_10750 0.17 -0.1 2,022,100 + espY2 OKFHMN_10750 0.26 +0.4 2,022,101 - espY2 OKFHMN_10750 0.26 -1.7 2,022,137 + espY2 OKFHMN_10750 0.33 +0.1 2,022,274 - espY2 OKFHMN_10750 0.57 -0.9 2,022,350 - espY2 OKFHMN_10750 0.70 +0.4 2,022,383 + espY2 OKFHMN_10750 0.76 -0.1 2,022,384 - espY2 OKFHMN_10750 0.76 -0.3 2,022,397 + espY2 OKFHMN_10750 0.78 -1.3 2,022,451 + espY2 OKFHMN_10750 0.88 -0.0 2,022,493 + +1.1 2,022,494 - +0.8 2,022,513 - +0.4 2,022,556 - -0.5 2,022,574 + +0.3 2,022,574 + +0.9 2,022,610 + -0.0 2,022,616 - +0.4 2,022,616 - -0.3 2,022,616 - +0.7 2,022,620 - +0.5 2,022,630 + -0.3 2,022,631 - -0.1 2,022,666 + -1.6 2,022,675 - +0.4 2,022,698 - -0.1 2,022,712 + +0.2 2,022,723 + +0.2 2,022,965 - -0.3 2,022,967 - +0.3
Or see this region's nucleotide sequence