Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10395

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,946,811	+	fimA	OKFHMN_10385	0.47	+0.6
1,946,824	+	fimA	OKFHMN_10385	0.49	-0.2
1,946,825	-	fimA	OKFHMN_10385	0.49	+1.3
1,946,825	-	fimA	OKFHMN_10385	0.49	-0.1
1,946,830	+	fimA	OKFHMN_10385	0.50	-0.9
1,946,830	+	fimA	OKFHMN_10385	0.50	-0.0
1,946,830	+	fimA	OKFHMN_10385	0.50	-0.8
1,946,830	+	fimA	OKFHMN_10385	0.50	-0.4
1,946,919	+	fimA	OKFHMN_10385	0.65	-0.4
1,946,920	-	fimA	OKFHMN_10385	0.65	+0.0
1,946,920	-	fimA	OKFHMN_10385	0.65	-0.0
1,946,927	-	fimA	OKFHMN_10385	0.66	+0.7
1,946,933	-	fimA	OKFHMN_10385	0.67	-0.9
1,947,125	+				-0.7
1,947,125	+				-0.1
1,947,126	-				+0.5
1,947,147	+				+2.0
1,947,150	+				+0.1
1,947,150	+				+0.0
1,947,150	+				-0.1
1,947,151	-				+0.1
1,947,151	-				+0.3
1,947,151	-				+0.5
1,947,288	+	fimA	OKFHMN_10390	0.23	+0.4
1,947,289	-	fimA	OKFHMN_10390	0.23	+0.1
1,947,382	-	fimA	OKFHMN_10390	0.39	-2.4
1,947,492	+	fimA	OKFHMN_10390	0.57	+0.1
1,947,499	+	fimA	OKFHMN_10390	0.58	-0.3
1,947,500	-	fimA	OKFHMN_10390	0.59	+1.9
1,947,573	+	fimA	OKFHMN_10390	0.71	+0.9
1,947,574	-	fimA	OKFHMN_10390	0.71	+0.3
1,947,611	-	fimA	OKFHMN_10390	0.77	+1.1
1,947,664	-	fimA	OKFHMN_10390	0.86	-0.1
1,947,731	+				+0.4
1,947,731	+				+1.5
1,947,732	-				+0.4
1,947,732	-				-0.2
1,947,736	+				+1.1
1,947,743	-				-0.2
1,947,773	+				+0.0
1,947,808	+				-2.6
1,947,850	-				-1.5
1,947,852	-				+0.2
1,947,853	+				-0.1
1,947,854	-				+0.1
1,947,876	+	fimA	OKFHMN_10395	0.11	+0.3
1,947,877	-	fimA	OKFHMN_10395	0.11	-1.1
1,947,889	+	fimA	OKFHMN_10395	0.12	-1.8
1,947,889	+	fimA	OKFHMN_10395	0.12	+0.1
1,947,890	-	fimA	OKFHMN_10395	0.12	+0.6
1,947,906	-	fimA	OKFHMN_10395	0.14	-0.6
1,947,964	+	fimA	OKFHMN_10395	0.19	+0.7
1,947,964	+	fimA	OKFHMN_10395	0.19	+2.3
1,947,976	+	fimA	OKFHMN_10395	0.20	+0.3
1,947,991	+	fimA	OKFHMN_10395	0.21	-0.3
1,947,998	+	fimA	OKFHMN_10395	0.22	-0.6
1,948,016	+	fimA	OKFHMN_10395	0.23	-0.7
1,948,017	-	fimA	OKFHMN_10395	0.24	+0.0
1,948,035	-	fimA	OKFHMN_10395	0.25	+0.8
1,948,065	+	fimA	OKFHMN_10395	0.28	+0.5
1,948,120	-	fimA	OKFHMN_10395	0.33	-1.0
1,948,132	+	fimA	OKFHMN_10395	0.34	+0.1
1,948,133	-	fimA	OKFHMN_10395	0.34	+0.2
1,948,136	-	fimA	OKFHMN_10395	0.34	-0.6
1,948,142	+	fimA	OKFHMN_10395	0.35	-0.3
1,948,142	+	fimA	OKFHMN_10395	0.35	+0.0
1,948,142	+	fimA	OKFHMN_10395	0.35	+0.2
1,948,143	-	fimA	OKFHMN_10395	0.35	+0.9
1,948,171	+	fimA	OKFHMN_10395	0.37	-1.7
1,948,171	+	fimA	OKFHMN_10395	0.37	-1.2
1,948,172	-	fimA	OKFHMN_10395	0.37	+0.0
1,948,178	-	fimA	OKFHMN_10395	0.38	+0.1
1,948,200	-	fimA	OKFHMN_10395	0.40	-0.0
1,948,233	+	fimA	OKFHMN_10395	0.43	-1.1
1,948,234	-	fimA	OKFHMN_10395	0.43	-2.0
1,948,262	-	fimA	OKFHMN_10395	0.46	+0.9
1,948,262	-	fimA	OKFHMN_10395	0.46	-0.3
1,948,350	+	fimA	OKFHMN_10395	0.54	-1.0
1,948,350	+	fimA	OKFHMN_10395	0.54	-2.5
1,948,350	+	fimA	OKFHMN_10395	0.54	+0.5
1,948,350	+	fimA	OKFHMN_10395	0.54	-1.4
1,948,351	-	fimA	OKFHMN_10395	0.54	+0.2
1,948,351	-	fimA	OKFHMN_10395	0.54	+0.2
1,948,354	+	fimA	OKFHMN_10395	0.54	+0.9
1,948,354	+	fimA	OKFHMN_10395	0.54	-1.3
1,948,354	+	fimA	OKFHMN_10395	0.54	+0.2
1,948,354	+	fimA	OKFHMN_10395	0.54	+1.6
1,948,354	+	fimA	OKFHMN_10395	0.54	+0.5
1,948,354	+	fimA	OKFHMN_10395	0.54	+0.7
1,948,355	-	fimA	OKFHMN_10395	0.54	-1.3
1,948,358	+	fimA	OKFHMN_10395	0.54	+0.4
1,948,358	+	fimA	OKFHMN_10395	0.54	-0.0
1,948,358	+	fimA	OKFHMN_10395	0.54	+0.0
1,948,500	+	fimA	OKFHMN_10395	0.67	-0.3
1,948,500	+	fimA	OKFHMN_10395	0.67	-0.8
1,948,500	+	fimA	OKFHMN_10395	0.67	-0.0
1,948,567	-	fimA	OKFHMN_10395	0.73	-2.1
1,948,680	+	fimA	OKFHMN_10395	0.83	-0.8
1,948,681	-	fimA	OKFHMN_10395	0.83	-0.3
1,948,696	+	fimA	OKFHMN_10395	0.85	-2.1
1,948,696	+	fimA	OKFHMN_10395	0.85	+0.7
1,948,702	+	fimA	OKFHMN_10395	0.85	-0.4
1,948,715	+	fimA	OKFHMN_10395	0.86	+0.0
1,948,716	-	fimA	OKFHMN_10395	0.86	-2.9
1,948,732	-	fimA	OKFHMN_10395	0.88	-2.0
1,948,853	+				+0.3
1,948,853	+				+0.6
1,948,854	-				+1.2
1,948,867	+				+1.6
1,948,929	+				+0.0
1,948,930	-				-0.2
1,948,930	-				+0.5
1,948,930	-				-0.6
1,948,960	+				-0.6
1,948,982	+				-0.0
1,948,982	+				-0.7
1,949,035	+				-2.4
1,949,036	-				-1.3
1,949,036	-				-2.0
1,949,167	+	panB	OKFHMN_10400	0.21	-1.7
1,949,168	-	panB	OKFHMN_10400	0.21	-0.7
1,949,267	+	panB	OKFHMN_10400	0.34	-1.7
1,949,324	-	panB	OKFHMN_10400	0.41	-0.6
1,949,324	-	panB	OKFHMN_10400	0.41	-0.7
1,949,398	-	panB	OKFHMN_10400	0.50	-1.4
1,949,435	-	panB	OKFHMN_10400	0.55	-0.8
1,949,491	+	panB	OKFHMN_10400	0.62	-1.2
1,949,502	+	panB	OKFHMN_10400	0.63	-0.9
1,949,508	+	panB	OKFHMN_10400	0.64	-0.7
1,949,509	-	panB	OKFHMN_10400	0.64	-1.8
1,949,509	-	panB	OKFHMN_10400	0.64	-2.8
1,949,509	-	panB	OKFHMN_10400	0.64	-2.7
1,949,570	-	panB	OKFHMN_10400	0.72	-1.7
1,949,674	+	panB	OKFHMN_10400	0.85	-2.8
1,949,738	+				+0.0
1,949,738	+				-0.9
1,949,738	+				-1.1
1,949,739	-				-1.9
1,949,739	-				-1.2
1,949,740	+				+0.1
1,949,740	+				-3.1
1,949,740	+				-0.7
1,949,740	+				-1.4
1,949,810	+				-1.1
1,949,859	+				-0.5