Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09365

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09355 and OKFHMN_09360 are separated by 30 nucleotidesOKFHMN_09360 and OKFHMN_09365 overlap by 8 nucleotidesOKFHMN_09365 and OKFHMN_09370 overlap by 1 nucleotidesOKFHMN_09370 and OKFHMN_09375 overlap by 28 nucleotidesOKFHMN_09375 and OKFHMN_09380 overlap by 61 nucleotides OKFHMN_09355: OKFHMN_09355 - hypothetical protein, at 1,758,302 to 1,758,892 _09355 OKFHMN_09360: OKFHMN_09360 - AAA family ATPase, at 1,758,923 to 1,759,555 _09360 OKFHMN_09365: OKFHMN_09365 - ABC-three component (ABC-3C) system Middle Component 2, at 1,759,548 to 1,760,006 _09365 OKFHMN_09370: OKFHMN_09370 - Phage-associated protein, at 1,760,006 to 1,760,623 _09370 OKFHMN_09375: OKFHMN_09375 - hypothetical protein, at 1,760,596 to 1,760,901 _09375 OKFHMN_09380: OKFHMN_09380 - hypothetical protein, at 1,760,841 to 1,760,951 _09380 Position (kb) 1759 1760 1761Strain fitness (log2 ratio) -1 0 1at 1759.675 kb on + strand, within OKFHMN_09365at 1760.140 kb on + strand, within OKFHMN_09370at 1760.223 kb on - strand, within OKFHMN_09370

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,759,675 + OKFHMN_09365 0.28 +0.4
1,760,140 + OKFHMN_09370 0.22 -0.3
1,760,223 - OKFHMN_09370 0.35 -1.6

Or see this region's nucleotide sequence