Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paoD and araJ are separated by 178 nucleotides araJ and frsA are separated by 141 nucleotides
OKFHMN_09260: paoD - molybdenum cofactor insertion chaperone PaoD, at 1,741,869 to 1,742,825
paoD
OKFHMN_09265: araJ - putative arabinose efflux permease AraJ, MFS family, at 1,743,004 to 1,744,131
araJ
OKFHMN_09270: frsA - DUF1100 domain-containing protein, at 1,744,273 to 1,745,331
frsA
Position (kb) 1743
1744
1745 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1742.239 kb on + strand, within paoD at 1742.481 kb on - strand, within paoD at 1742.644 kb on + strand, within paoD at 1742.645 kb on - strand, within paoD at 1742.645 kb on - strand, within paoD at 1742.742 kb on - strand at 1742.780 kb on - strand at 1742.873 kb on - strand at 1742.943 kb on + strand at 1743.073 kb on - strand at 1743.204 kb on + strand, within araJ at 1743.204 kb on + strand, within araJ at 1743.205 kb on - strand, within araJ at 1743.266 kb on - strand, within araJ at 1743.532 kb on + strand, within araJ at 1743.533 kb on - strand, within araJ at 1743.533 kb on - strand, within araJ at 1743.707 kb on + strand, within araJ at 1743.708 kb on - strand, within araJ at 1743.870 kb on + strand, within araJ at 1743.870 kb on + strand, within araJ at 1743.870 kb on + strand, within araJ at 1743.871 kb on - strand, within araJ at 1743.872 kb on + strand, within araJ at 1743.872 kb on + strand, within araJ at 1743.873 kb on - strand, within araJ at 1743.873 kb on - strand, within araJ at 1743.881 kb on + strand, within araJ at 1743.888 kb on + strand, within araJ at 1743.904 kb on - strand, within araJ at 1744.018 kb on - strand, within araJ at 1744.198 kb on - strand at 1744.406 kb on + strand, within frsA at 1744.407 kb on - strand, within frsA at 1744.407 kb on - strand, within frsA at 1744.407 kb on - strand, within frsA at 1744.407 kb on - strand, within frsA at 1744.407 kb on - strand, within frsA at 1744.500 kb on + strand, within frsA at 1744.501 kb on - strand, within frsA at 1744.501 kb on - strand, within frsA at 1744.507 kb on - strand, within frsA at 1744.586 kb on + strand, within frsA at 1744.587 kb on - strand, within frsA at 1744.587 kb on - strand, within frsA at 1744.683 kb on + strand, within frsA at 1745.042 kb on + strand, within frsA at 1745.042 kb on + strand, within frsA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,742,239 + paoD OKFHMN_09260 0.39 +0.8 1,742,481 - paoD OKFHMN_09260 0.64 -1.5 1,742,644 + paoD OKFHMN_09260 0.81 -3.6 1,742,645 - paoD OKFHMN_09260 0.81 -0.5 1,742,645 - paoD OKFHMN_09260 0.81 +0.1 1,742,742 - +0.4 1,742,780 - +0.1 1,742,873 - -1.2 1,742,943 + -3.1 1,743,073 - +0.9 1,743,204 + araJ OKFHMN_09265 0.18 -4.2 1,743,204 + araJ OKFHMN_09265 0.18 +0.4 1,743,205 - araJ OKFHMN_09265 0.18 +0.3 1,743,266 - araJ OKFHMN_09265 0.23 -3.9 1,743,532 + araJ OKFHMN_09265 0.47 -0.9 1,743,533 - araJ OKFHMN_09265 0.47 -0.1 1,743,533 - araJ OKFHMN_09265 0.47 -1.0 1,743,707 + araJ OKFHMN_09265 0.62 -0.6 1,743,708 - araJ OKFHMN_09265 0.62 +0.4 1,743,870 + araJ OKFHMN_09265 0.77 +0.3 1,743,870 + araJ OKFHMN_09265 0.77 +0.8 1,743,870 + araJ OKFHMN_09265 0.77 +1.2 1,743,871 - araJ OKFHMN_09265 0.77 +1.0 1,743,872 + araJ OKFHMN_09265 0.77 +1.0 1,743,872 + araJ OKFHMN_09265 0.77 +0.7 1,743,873 - araJ OKFHMN_09265 0.77 +0.1 1,743,873 - araJ OKFHMN_09265 0.77 +0.4 1,743,881 + araJ OKFHMN_09265 0.78 -0.4 1,743,888 + araJ OKFHMN_09265 0.78 -0.0 1,743,904 - araJ OKFHMN_09265 0.80 +0.6 1,744,018 - araJ OKFHMN_09265 0.90 +0.8 1,744,198 - +0.8 1,744,406 + frsA OKFHMN_09270 0.13 -1.5 1,744,407 - frsA OKFHMN_09270 0.13 +0.1 1,744,407 - frsA OKFHMN_09270 0.13 +0.6 1,744,407 - frsA OKFHMN_09270 0.13 +0.2 1,744,407 - frsA OKFHMN_09270 0.13 +0.4 1,744,407 - frsA OKFHMN_09270 0.13 +0.8 1,744,500 + frsA OKFHMN_09270 0.21 +0.3 1,744,501 - frsA OKFHMN_09270 0.22 +0.6 1,744,501 - frsA OKFHMN_09270 0.22 -0.3 1,744,507 - frsA OKFHMN_09270 0.22 -1.3 1,744,586 + frsA OKFHMN_09270 0.30 -0.5 1,744,587 - frsA OKFHMN_09270 0.30 -1.2 1,744,587 - frsA OKFHMN_09270 0.30 -2.1 1,744,683 + frsA OKFHMN_09270 0.39 +0.6 1,745,042 + frsA OKFHMN_09270 0.73 +0.1 1,745,042 + frsA OKFHMN_09270 0.73 -0.8
Or see this region's nucleotide sequence