Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08685

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemB and tauD are separated by 106 nucleotidestauD and tauC overlap by 4 nucleotidestauC and tauB overlap by 4 nucleotides OKFHMN_08680: hemB - porphobilinogen synthase, at 1,622,275 to 1,623,249 hemB OKFHMN_08685: tauD - taurine dioxygenase, at 1,623,356 to 1,624,207 tauD OKFHMN_08690: tauC - taurine ABC transporter permease TauC, at 1,624,204 to 1,625,031 tauC OKFHMN_08695: tauB - taurine ABC transporter ATP-binding subunit, at 1,625,028 to 1,625,795 tauB Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -2 -1 0 1at 1623.355 kb on - strandat 1623.369 kb on + strandat 1623.379 kb on + strandat 1623.407 kb on - strandat 1623.476 kb on - strand, within tauDat 1623.653 kb on + strand, within tauDat 1624.004 kb on - strand, within tauDat 1624.004 kb on - strand, within tauDat 1624.092 kb on - strand, within tauDat 1624.265 kb on - strandat 1624.348 kb on - strand, within tauCat 1624.424 kb on - strand, within tauCat 1624.424 kb on - strand, within tauCat 1624.859 kb on - strand, within tauCat 1624.890 kb on + strand, within tauCat 1625.016 kb on + strandat 1625.017 kb on - strandat 1625.071 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,623,355 - -0.7
1,623,369 + -2.3
1,623,379 + -1.3
1,623,407 - +0.3
1,623,476 - tauD OKFHMN_08685 0.14 -0.8
1,623,653 + tauD OKFHMN_08685 0.35 -0.4
1,624,004 - tauD OKFHMN_08685 0.76 -0.7
1,624,004 - tauD OKFHMN_08685 0.76 -1.4
1,624,092 - tauD OKFHMN_08685 0.86 -0.8
1,624,265 - -0.0
1,624,348 - tauC OKFHMN_08690 0.17 +0.1
1,624,424 - tauC OKFHMN_08690 0.27 -2.6
1,624,424 - tauC OKFHMN_08690 0.27 +0.4
1,624,859 - tauC OKFHMN_08690 0.79 -0.5
1,624,890 + tauC OKFHMN_08690 0.83 -1.2
1,625,016 + -0.4
1,625,017 - -0.2
1,625,071 + +0.4

Or see this region's nucleotide sequence