Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ylbE and fdrA are separated by 9 nucleotides fdrA and allD are separated by 316 nucleotides
OKFHMN_07855: ylbE - Uncharacterized protein YlbE, at 1,431,187 to 1,432,446
ylbE
OKFHMN_07860: fdrA - Protein FdrA, at 1,432,456 to 1,434,123
fdrA
OKFHMN_07865: allD - ureidoglycolate dehydrogenase, at 1,434,440 to 1,435,489
allD
Position (kb) 1432
1433
1434
1435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1431.611 kb on - strand, within ylbE at 1431.663 kb on + strand, within ylbE at 1431.857 kb on - strand, within ylbE at 1431.876 kb on + strand, within ylbE at 1431.907 kb on - strand, within ylbE at 1431.930 kb on + strand, within ylbE at 1431.971 kb on - strand, within ylbE at 1431.973 kb on + strand, within ylbE at 1431.982 kb on + strand, within ylbE at 1432.134 kb on + strand, within ylbE at 1432.135 kb on - strand, within ylbE at 1432.440 kb on + strand at 1432.440 kb on + strand at 1432.440 kb on + strand at 1432.472 kb on - strand at 1432.549 kb on + strand at 1432.649 kb on - strand, within fdrA at 1432.649 kb on - strand, within fdrA at 1432.778 kb on + strand, within fdrA at 1432.778 kb on + strand, within fdrA at 1432.937 kb on - strand, within fdrA at 1432.937 kb on - strand, within fdrA at 1432.937 kb on - strand, within fdrA at 1433.078 kb on - strand, within fdrA at 1433.115 kb on - strand, within fdrA at 1433.127 kb on + strand, within fdrA at 1433.158 kb on - strand, within fdrA at 1433.257 kb on - strand, within fdrA at 1433.258 kb on + strand, within fdrA at 1433.264 kb on - strand, within fdrA at 1433.464 kb on - strand, within fdrA at 1433.647 kb on - strand, within fdrA at 1433.986 kb on + strand at 1433.997 kb on + strand at 1434.472 kb on - strand at 1434.542 kb on + strand at 1434.591 kb on - strand, within allD at 1434.899 kb on + strand, within allD at 1435.015 kb on + strand, within allD at 1435.015 kb on + strand, within allD at 1435.016 kb on - strand, within allD
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,431,611 - ylbE OKFHMN_07855 0.34 +1.0 1,431,663 + ylbE OKFHMN_07855 0.38 -1.1 1,431,857 - ylbE OKFHMN_07855 0.53 +0.1 1,431,876 + ylbE OKFHMN_07855 0.55 -0.3 1,431,907 - ylbE OKFHMN_07855 0.57 +1.3 1,431,930 + ylbE OKFHMN_07855 0.59 +0.4 1,431,971 - ylbE OKFHMN_07855 0.62 +1.6 1,431,973 + ylbE OKFHMN_07855 0.62 +0.2 1,431,982 + ylbE OKFHMN_07855 0.63 -0.2 1,432,134 + ylbE OKFHMN_07855 0.75 -2.6 1,432,135 - ylbE OKFHMN_07855 0.75 -0.6 1,432,440 + -0.3 1,432,440 + +0.1 1,432,440 + +0.9 1,432,472 - +0.5 1,432,549 + -0.4 1,432,649 - fdrA OKFHMN_07860 0.12 +0.9 1,432,649 - fdrA OKFHMN_07860 0.12 -0.8 1,432,778 + fdrA OKFHMN_07860 0.19 +0.5 1,432,778 + fdrA OKFHMN_07860 0.19 +0.0 1,432,937 - fdrA OKFHMN_07860 0.29 +0.2 1,432,937 - fdrA OKFHMN_07860 0.29 -2.4 1,432,937 - fdrA OKFHMN_07860 0.29 +0.9 1,433,078 - fdrA OKFHMN_07860 0.37 +1.1 1,433,115 - fdrA OKFHMN_07860 0.40 -0.1 1,433,127 + fdrA OKFHMN_07860 0.40 -0.2 1,433,158 - fdrA OKFHMN_07860 0.42 +0.2 1,433,257 - fdrA OKFHMN_07860 0.48 +1.2 1,433,258 + fdrA OKFHMN_07860 0.48 +2.3 1,433,264 - fdrA OKFHMN_07860 0.48 -0.5 1,433,464 - fdrA OKFHMN_07860 0.60 +0.6 1,433,647 - fdrA OKFHMN_07860 0.71 -0.1 1,433,986 + -0.2 1,433,997 + -1.4 1,434,472 - +0.8 1,434,542 + -0.9 1,434,591 - allD OKFHMN_07865 0.14 -1.9 1,434,899 + allD OKFHMN_07865 0.44 +0.2 1,435,015 + allD OKFHMN_07865 0.55 -0.6 1,435,015 + allD OKFHMN_07865 0.55 +0.3 1,435,016 - allD OKFHMN_07865 0.55 +0.6
Or see this region's nucleotide sequence