Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07825

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysS and ppiB are separated by 173 nucleotidesppiB and lpxH are separated by 2 nucleotideslpxH and purE are separated by 117 nucleotides OKFHMN_07820: cysS - cysteine--tRNA ligase, at 1,424,863 to 1,426,248 cysS OKFHMN_07825: ppiB - peptidylprolyl isomerase B, at 1,426,422 to 1,426,916 ppiB OKFHMN_07830: lpxH - UDP-2,3-diacylglucosamine diphosphatase, at 1,426,919 to 1,427,641 lpxH OKFHMN_07835: purE - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,427,759 to 1,428,268 purE Position (kb) 1426 1427Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1426.290 kb on - strandat 1426.290 kb on - strandat 1426.290 kb on - strandat 1426.295 kb on - strandat 1426.322 kb on - strandat 1426.322 kb on - strandat 1426.355 kb on + strandat 1426.355 kb on + strandat 1426.368 kb on + strandat 1426.368 kb on + strandat 1426.370 kb on + strandat 1426.370 kb on + strandat 1426.370 kb on + strandat 1426.370 kb on + strandat 1426.370 kb on + strandat 1426.372 kb on + strandat 1426.372 kb on + strandat 1426.372 kb on + strandat 1426.372 kb on + strandat 1426.372 kb on + strandat 1426.372 kb on + strandat 1426.372 kb on + strandat 1426.372 kb on + strandat 1427.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,426,290 - -3.5
1,426,290 - +0.9
1,426,290 - -0.9
1,426,295 - -0.5
1,426,322 - +0.3
1,426,322 - -0.2
1,426,355 + +0.5
1,426,355 + +1.4
1,426,368 + +0.3
1,426,368 + +0.4
1,426,370 + -0.5
1,426,370 + -1.6
1,426,370 + +0.3
1,426,370 + +1.2
1,426,370 + -2.2
1,426,372 + -0.2
1,426,372 + +0.1
1,426,372 + +0.5
1,426,372 + -0.8
1,426,372 + +2.8
1,426,372 + +0.1
1,426,372 + +0.4
1,426,372 + -0.9
1,427,705 - -5.9

Or see this region's nucleotide sequence