Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_05690 and hsdM are separated by 39 nucleotides
OKFHMN_05690: OKFHMN_05690 - Ybl103, at 976,417 to 976,593
_05690
OKFHMN_05695: hsdM - type I restriction-modification system subunit M, at 976,633 to 979,071
hsdM
Position (kb) 976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 975.491 kb on - strand at 975.546 kb on + strand at 975.547 kb on - strand at 975.677 kb on + strand at 975.761 kb on - strand at 975.784 kb on + strand at 975.803 kb on + strand at 975.804 kb on - strand at 975.805 kb on + strand at 975.805 kb on + strand at 975.806 kb on - strand at 975.807 kb on + strand at 975.807 kb on + strand at 975.807 kb on + strand at 975.808 kb on - strand at 975.975 kb on - strand at 976.038 kb on + strand at 976.038 kb on + strand at 976.059 kb on + strand at 976.064 kb on + strand at 976.064 kb on + strand at 976.087 kb on + strand at 976.138 kb on + strand at 976.138 kb on + strand at 976.139 kb on - strand at 976.150 kb on - strand at 976.151 kb on + strand at 976.151 kb on + strand at 976.152 kb on - strand at 976.152 kb on - strand at 976.201 kb on + strand at 976.241 kb on + strand at 976.312 kb on + strand at 976.312 kb on + strand at 976.321 kb on - strand at 976.380 kb on + strand at 976.394 kb on + strand at 976.422 kb on + strand at 976.422 kb on + strand at 976.441 kb on + strand, within OKFHMN_05690 at 976.486 kb on + strand, within OKFHMN_05690 at 976.520 kb on - strand, within OKFHMN_05690 at 976.723 kb on + strand at 976.723 kb on + strand at 976.723 kb on + strand at 976.724 kb on - strand at 976.724 kb on - strand at 976.750 kb on + strand at 976.765 kb on + strand at 976.765 kb on + strand at 976.765 kb on + strand at 976.765 kb on + strand at 976.821 kb on + strand at 976.821 kb on + strand at 976.821 kb on + strand at 976.929 kb on + strand, within hsdM at 977.056 kb on + strand, within hsdM at 977.160 kb on + strand, within hsdM at 977.355 kb on + strand, within hsdM at 977.524 kb on + strand, within hsdM at 977.541 kb on + strand, within hsdM at 977.541 kb on + strand, within hsdM at 977.541 kb on + strand, within hsdM at 977.547 kb on + strand, within hsdM at 977.547 kb on + strand, within hsdM
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 975,491 - -1.7 975,546 + +0.1 975,547 - +0.1 975,677 + +0.2 975,761 - +0.9 975,784 + -0.6 975,803 + -0.3 975,804 - +1.1 975,805 + +0.1 975,805 + +1.1 975,806 - +1.0 975,807 + -1.1 975,807 + +0.8 975,807 + +0.3 975,808 - -3.6 975,975 - +0.1 976,038 + +1.6 976,038 + -1.6 976,059 + -0.5 976,064 + +1.9 976,064 + +1.6 976,087 + -2.1 976,138 + +0.9 976,138 + -0.3 976,139 - +0.4 976,150 - -3.1 976,151 + -0.3 976,151 + -1.3 976,152 - +0.1 976,152 - +1.5 976,201 + -1.8 976,241 + +0.5 976,312 + -2.2 976,312 + -0.5 976,321 - -2.2 976,380 + -0.2 976,394 + +0.5 976,422 + -0.1 976,422 + +1.4 976,441 + OKFHMN_05690 0.14 +0.0 976,486 + OKFHMN_05690 0.39 +0.9 976,520 - OKFHMN_05690 0.58 +0.8 976,723 + -1.3 976,723 + +0.4 976,723 + -0.1 976,724 - +0.3 976,724 - -1.3 976,750 + +0.3 976,765 + -0.5 976,765 + -0.0 976,765 + -0.6 976,765 + +0.6 976,821 + -1.8 976,821 + +0.3 976,821 + +0.3 976,929 + hsdM OKFHMN_05695 0.12 -0.8 977,056 + hsdM OKFHMN_05695 0.17 -0.5 977,160 + hsdM OKFHMN_05695 0.22 +0.4 977,355 + hsdM OKFHMN_05695 0.30 +0.5 977,524 + hsdM OKFHMN_05695 0.37 +0.3 977,541 + hsdM OKFHMN_05695 0.37 +0.5 977,541 + hsdM OKFHMN_05695 0.37 +0.2 977,541 + hsdM OKFHMN_05695 0.37 +1.9 977,547 + hsdM OKFHMN_05695 0.37 -1.6 977,547 + hsdM OKFHMN_05695 0.37 -0.8
Or see this region's nucleotide sequence