Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aat and infA are separated by 284 nucleotides infA and Ser_trna are separated by 253 nucleotides Ser_trna and OKFHMN_05610 are separated by 149 nucleotides OKFHMN_05610 and OKFHMN_05615 are separated by 293 nucleotides OKFHMN_05615 and OKFHMN_05620 overlap by 4 nucleotides
OKFHMN_05595: aat - leucyl/phenylalanyl-tRNA--protein transferase, at 957,659 to 958,363
aat
OKFHMN_05600: infA - translation initiation factor IF-1, at 958,648 to 958,866
infA
OKFHMN_05605: Ser_trna - tRNA-Ser(gga), at 959,120 to 959,207
_trna
OKFHMN_05610: OKFHMN_05610 - restriction endonuclease subunit M, at 959,357 to 960,199
_05610
OKFHMN_05615: OKFHMN_05615 - hypothetical protein, at 960,493 to 960,981
_05615
OKFHMN_05620: OKFHMN_05620 - toxin, at 960,978 to 961,355
_05620
Position (kb) 959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 958.462 kb on + strand at 958.494 kb on + strand at 958.494 kb on + strand at 958.494 kb on + strand at 958.494 kb on + strand at 958.495 kb on - strand at 958.495 kb on - strand at 958.495 kb on - strand at 958.952 kb on - strand at 958.991 kb on + strand at 958.991 kb on + strand at 958.991 kb on + strand at 958.992 kb on - strand at 959.224 kb on + strand at 959.297 kb on + strand at 959.395 kb on + strand at 959.467 kb on + strand, within OKFHMN_05610 at 959.487 kb on + strand, within OKFHMN_05610 at 959.533 kb on + strand, within OKFHMN_05610 at 959.533 kb on + strand, within OKFHMN_05610 at 959.537 kb on + strand, within OKFHMN_05610 at 959.608 kb on + strand, within OKFHMN_05610 at 959.629 kb on + strand, within OKFHMN_05610 at 960.658 kb on + strand, within OKFHMN_05615 at 960.712 kb on - strand, within OKFHMN_05615 at 960.781 kb on - strand, within OKFHMN_05615 at 961.148 kb on - strand, within OKFHMN_05620
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 958,462 + -1.1 958,494 + +0.0 958,494 + +0.3 958,494 + +0.6 958,494 + +0.6 958,495 - -0.1 958,495 - -1.7 958,495 - -3.6 958,952 - -1.2 958,991 + +0.2 958,991 + +0.3 958,991 + +1.5 958,992 - +0.7 959,224 + +0.1 959,297 + -0.0 959,395 + -0.3 959,467 + OKFHMN_05610 0.13 -0.9 959,487 + OKFHMN_05610 0.15 +1.7 959,533 + OKFHMN_05610 0.21 -0.5 959,533 + OKFHMN_05610 0.21 +1.7 959,537 + OKFHMN_05610 0.21 -2.0 959,608 + OKFHMN_05610 0.30 -1.7 959,629 + OKFHMN_05610 0.32 +0.0 960,658 + OKFHMN_05615 0.34 -0.6 960,712 - OKFHMN_05615 0.45 +0.2 960,781 - OKFHMN_05615 0.59 +0.9 961,148 - OKFHMN_05620 0.45 +0.9
Or see this region's nucleotide sequence