Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_05300 and fimA are separated by 13 nucleotides fimA and ycbU overlap by 41 nucleotides ycbU and elfG are separated by 168 nucleotides
OKFHMN_05300: OKFHMN_05300 - PapD-N domain-containing protein, at 882,207 to 882,728
_05300
OKFHMN_05305: fimA - fimbrial protein, at 882,742 to 883,305
fimA
OKFHMN_05310: ycbU - Uncharacterized fimbrial-like protein YcbU, at 883,265 to 883,741
ycbU
OKFHMN_05315: elfG - Uncharacterized fimbrial-like protein ElfG, at 883,910 to 884,890
elfG
Position (kb) 883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 882.271 kb on + strand, within OKFHMN_05300 at 882.282 kb on - strand, within OKFHMN_05300 at 882.330 kb on - strand, within OKFHMN_05300 at 882.330 kb on - strand, within OKFHMN_05300 at 882.491 kb on + strand, within OKFHMN_05300 at 882.492 kb on - strand, within OKFHMN_05300 at 882.600 kb on - strand, within OKFHMN_05300 at 882.615 kb on - strand, within OKFHMN_05300 at 882.615 kb on - strand, within OKFHMN_05300 at 882.740 kb on + strand at 882.833 kb on - strand, within fimA at 883.150 kb on - strand, within fimA at 883.288 kb on - strand at 883.350 kb on + strand, within ycbU at 883.376 kb on + strand, within ycbU at 883.377 kb on - strand, within ycbU at 883.553 kb on - strand, within ycbU at 883.580 kb on - strand, within ycbU at 883.645 kb on + strand, within ycbU at 883.711 kb on + strand at 883.712 kb on - strand at 883.712 kb on - strand at 883.821 kb on + strand at 883.877 kb on + strand at 883.973 kb on - strand at 884.040 kb on + strand, within elfG at 884.041 kb on - strand, within elfG at 884.152 kb on + strand, within elfG at 884.153 kb on - strand, within elfG at 884.263 kb on - strand, within elfG at 884.265 kb on + strand, within elfG at 884.265 kb on + strand, within elfG at 884.266 kb on - strand, within elfG at 884.320 kb on - strand, within elfG at 884.509 kb on + strand, within elfG at 884.587 kb on - strand, within elfG at 884.661 kb on + strand, within elfG at 884.662 kb on - strand, within elfG at 884.703 kb on - strand, within elfG
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 882,271 + OKFHMN_05300 0.12 -2.0 882,282 - OKFHMN_05300 0.14 -0.6 882,330 - OKFHMN_05300 0.24 -0.7 882,330 - OKFHMN_05300 0.24 -0.4 882,491 + OKFHMN_05300 0.54 +0.2 882,492 - OKFHMN_05300 0.55 +0.1 882,600 - OKFHMN_05300 0.75 +0.3 882,615 - OKFHMN_05300 0.78 +0.7 882,615 - OKFHMN_05300 0.78 +0.5 882,740 + -0.8 882,833 - fimA OKFHMN_05305 0.16 +0.7 883,150 - fimA OKFHMN_05305 0.72 +0.0 883,288 - +0.4 883,350 + ycbU OKFHMN_05310 0.18 +0.4 883,376 + ycbU OKFHMN_05310 0.23 -0.2 883,377 - ycbU OKFHMN_05310 0.23 +1.7 883,553 - ycbU OKFHMN_05310 0.60 +2.2 883,580 - ycbU OKFHMN_05310 0.66 +1.2 883,645 + ycbU OKFHMN_05310 0.80 +2.0 883,711 + -1.3 883,712 - -1.6 883,712 - -0.6 883,821 + +1.9 883,877 + -0.0 883,973 - +2.1 884,040 + elfG OKFHMN_05315 0.13 +0.8 884,041 - elfG OKFHMN_05315 0.13 -2.3 884,152 + elfG OKFHMN_05315 0.25 -0.2 884,153 - elfG OKFHMN_05315 0.25 -1.2 884,263 - elfG OKFHMN_05315 0.36 +0.1 884,265 + elfG OKFHMN_05315 0.36 -1.2 884,265 + elfG OKFHMN_05315 0.36 -0.9 884,266 - elfG OKFHMN_05315 0.36 +0.1 884,320 - elfG OKFHMN_05315 0.42 +0.2 884,509 + elfG OKFHMN_05315 0.61 -1.8 884,587 - elfG OKFHMN_05315 0.69 -0.2 884,661 + elfG OKFHMN_05315 0.77 -0.3 884,662 - elfG OKFHMN_05315 0.77 -0.9 884,703 - elfG OKFHMN_05315 0.81 -3.0
Or see this region's nucleotide sequence