Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_05085 and OKFHMN_05090 are separated by 78 nucleotides OKFHMN_05090 and OKFHMN_05095 are separated by 206 nucleotides OKFHMN_05095 and OKFHMN_05100 overlap by 17 nucleotides OKFHMN_05100 and hipB are separated by 108 nucleotides
OKFHMN_05085: OKFHMN_05085 - DNA-binding protein, at 845,184 to 846,275
_05085
OKFHMN_05090: OKFHMN_05090 - hypothetical protein, at 846,354 to 846,809
_05090
OKFHMN_05095: OKFHMN_05095 - Rha family transcriptional regulator, at 847,016 to 847,441
_05095
OKFHMN_05100: OKFHMN_05100 - Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT, at 847,425 to 847,697
_05100
OKFHMN_05105: hipB - XRE family transcriptional regulator, at 847,806 to 848,207
hipB
Position (kb) 846
847 Strain fitness (log2 ratio) -2
-1
0
1 at 845.363 kb on - strand, within OKFHMN_05085 at 845.748 kb on - strand, within OKFHMN_05085 at 846.040 kb on + strand, within OKFHMN_05085 at 846.041 kb on - strand, within OKFHMN_05085 at 846.041 kb on - strand, within OKFHMN_05085 at 846.045 kb on - strand, within OKFHMN_05085 at 846.072 kb on - strand, within OKFHMN_05085 at 846.139 kb on + strand, within OKFHMN_05085 at 846.139 kb on + strand, within OKFHMN_05085 at 846.152 kb on + strand, within OKFHMN_05085 at 846.216 kb on - strand at 846.311 kb on - strand at 846.391 kb on + strand at 846.487 kb on + strand, within OKFHMN_05090 at 846.807 kb on + strand at 846.996 kb on + strand at 847.102 kb on + strand, within OKFHMN_05095 at 847.130 kb on + strand, within OKFHMN_05095 at 847.475 kb on + strand, within OKFHMN_05100 at 847.634 kb on + strand, within OKFHMN_05100 at 847.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 845,363 - OKFHMN_05085 0.16 +0.9 845,748 - OKFHMN_05085 0.52 +0.9 846,040 + OKFHMN_05085 0.78 +1.0 846,041 - OKFHMN_05085 0.78 -0.8 846,041 - OKFHMN_05085 0.78 -1.0 846,045 - OKFHMN_05085 0.79 +1.4 846,072 - OKFHMN_05085 0.81 +0.4 846,139 + OKFHMN_05085 0.87 -0.3 846,139 + OKFHMN_05085 0.87 -0.8 846,152 + OKFHMN_05085 0.89 -0.2 846,216 - -2.5 846,311 - +0.1 846,391 + -0.3 846,487 + OKFHMN_05090 0.29 -0.0 846,807 + -0.4 846,996 + -0.4 847,102 + OKFHMN_05095 0.20 +0.4 847,130 + OKFHMN_05095 0.27 +0.4 847,475 + OKFHMN_05100 0.18 +1.3 847,634 + OKFHMN_05100 0.77 -1.2 847,717 + -0.3
Or see this region's nucleotide sequence