Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt appB and appC are separated by 11 nucleotides appC and OKFHMN_04785 are separated by 133 nucleotides OKFHMN_04785 and OKFHMN_04790 overlap by 4 nucleotides
OKFHMN_04775: appB - cytochrome d ubiquinol oxidase subunit II, at 796,474 to 797,610
appB
OKFHMN_04780: appC - cytochrome bd-II oxidase subunit 1, at 797,622 to 799,166
appC
OKFHMN_04785: OKFHMN_04785 - hydrogenase expression/formation protein, at 799,300 to 800,157
_04785
OKFHMN_04790: OKFHMN_04790 - hydrogenase 1 maturation protease, at 800,154 to 800,552
_04790
Position (kb) 797
798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 797.352 kb on - strand, within appB at 797.375 kb on + strand, within appB at 797.376 kb on - strand, within appB at 797.376 kb on - strand, within appB at 797.458 kb on - strand, within appB at 797.458 kb on - strand, within appB at 797.681 kb on - strand at 797.723 kb on - strand at 797.789 kb on - strand, within appC at 798.187 kb on - strand, within appC at 798.187 kb on - strand, within appC at 798.264 kb on - strand, within appC at 798.267 kb on + strand, within appC at 798.268 kb on - strand, within appC at 798.439 kb on + strand, within appC at 798.550 kb on + strand, within appC at 798.573 kb on - strand, within appC at 798.908 kb on - strand, within appC at 799.065 kb on - strand at 799.099 kb on - strand at 799.211 kb on - strand at 799.290 kb on + strand at 799.290 kb on + strand at 799.290 kb on + strand at 799.333 kb on + strand at 799.334 kb on - strand at 799.413 kb on - strand, within OKFHMN_04785 at 799.436 kb on - strand, within OKFHMN_04785 at 799.453 kb on + strand, within OKFHMN_04785 at 799.454 kb on - strand, within OKFHMN_04785 at 799.454 kb on - strand, within OKFHMN_04785 at 799.490 kb on + strand, within OKFHMN_04785 at 799.491 kb on - strand, within OKFHMN_04785 at 799.491 kb on - strand, within OKFHMN_04785 at 799.525 kb on - strand, within OKFHMN_04785 at 799.979 kb on - strand, within OKFHMN_04785 at 799.979 kb on - strand, within OKFHMN_04785 at 799.990 kb on + strand, within OKFHMN_04785
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 797,352 - appB OKFHMN_04775 0.77 +0.6 797,375 + appB OKFHMN_04775 0.79 +0.3 797,376 - appB OKFHMN_04775 0.79 -0.9 797,376 - appB OKFHMN_04775 0.79 +0.7 797,458 - appB OKFHMN_04775 0.87 -0.5 797,458 - appB OKFHMN_04775 0.87 +0.7 797,681 - -1.9 797,723 - +0.9 797,789 - appC OKFHMN_04780 0.11 +0.4 798,187 - appC OKFHMN_04780 0.37 -0.5 798,187 - appC OKFHMN_04780 0.37 +0.1 798,264 - appC OKFHMN_04780 0.42 +1.1 798,267 + appC OKFHMN_04780 0.42 -1.9 798,268 - appC OKFHMN_04780 0.42 -0.4 798,439 + appC OKFHMN_04780 0.53 -0.2 798,550 + appC OKFHMN_04780 0.60 +0.3 798,573 - appC OKFHMN_04780 0.62 -0.6 798,908 - appC OKFHMN_04780 0.83 +0.0 799,065 - +0.8 799,099 - +1.8 799,211 - +0.1 799,290 + +0.3 799,290 + +0.0 799,290 + +1.2 799,333 + -1.1 799,334 - +0.1 799,413 - OKFHMN_04785 0.13 -0.4 799,436 - OKFHMN_04785 0.16 -1.2 799,453 + OKFHMN_04785 0.18 -2.5 799,454 - OKFHMN_04785 0.18 +0.3 799,454 - OKFHMN_04785 0.18 -2.4 799,490 + OKFHMN_04785 0.22 -2.8 799,491 - OKFHMN_04785 0.22 -1.4 799,491 - OKFHMN_04785 0.22 +0.0 799,525 - OKFHMN_04785 0.26 +0.3 799,979 - OKFHMN_04785 0.79 -0.0 799,979 - OKFHMN_04785 0.79 +1.0 799,990 + OKFHMN_04785 0.80 -0.3
Or see this region's nucleotide sequence