Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04490

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_04480 and OKFHMN_04485 are separated by 268 nucleotidesOKFHMN_04485 and fimA are separated by 42 nucleotidesfimA and fimC are separated by 85 nucleotidesfimC and fimD are separated by 52 nucleotides OKFHMN_04480: OKFHMN_04480 - hypothetical protein, at 729,812 to 729,922 _04480 OKFHMN_04485: OKFHMN_04485 - hypothetical protein, at 730,191 to 730,814 _04485 OKFHMN_04490: fimA - fimbrial protein, at 730,857 to 731,417 fimA OKFHMN_04495: fimC - P pilus assembly protein, chaperone PapD, at 731,503 to 732,204 fimC OKFHMN_04500: fimD - fimbrial protein, at 732,257 to 734,779 fimD Position (kb) 730 731 732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 730.402 kb on + strand, within OKFHMN_04485at 730.916 kb on + strand, within fimAat 731.017 kb on + strand, within fimAat 731.257 kb on + strand, within fimAat 731.409 kb on + strandat 731.657 kb on - strand, within fimCat 731.665 kb on - strand, within fimCat 731.665 kb on - strand, within fimCat 731.835 kb on - strand, within fimCat 731.835 kb on - strand, within fimCat 731.963 kb on - strand, within fimCat 732.011 kb on - strand, within fimCat 732.039 kb on + strand, within fimCat 732.040 kb on - strand, within fimCat 732.110 kb on + strand, within fimCat 732.202 kb on + strandat 732.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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730,402 + OKFHMN_04485 0.34 +0.0
730,916 + fimA OKFHMN_04490 0.11 -0.0
731,017 + fimA OKFHMN_04490 0.29 +0.1
731,257 + fimA OKFHMN_04490 0.71 +1.5
731,409 + +0.9
731,657 - fimC OKFHMN_04495 0.22 -1.7
731,665 - fimC OKFHMN_04495 0.23 +0.2
731,665 - fimC OKFHMN_04495 0.23 +0.8
731,835 - fimC OKFHMN_04495 0.47 -1.7
731,835 - fimC OKFHMN_04495 0.47 +0.3
731,963 - fimC OKFHMN_04495 0.66 +0.7
732,011 - fimC OKFHMN_04495 0.72 +0.1
732,039 + fimC OKFHMN_04495 0.76 +3.5
732,040 - fimC OKFHMN_04495 0.76 +0.5
732,110 + fimC OKFHMN_04495 0.86 +0.5
732,202 + -1.5
732,363 - -3.8

Or see this region's nucleotide sequence