Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01640

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydcK and rimL are separated by 234 nucleotidesrimL and ydcH are separated by 62 nucleotidesydcH and opgD are separated by 139 nucleotides OKFHMN_01630: ydcK - YdcK family protein, at 233,108 to 234,088 ydcK OKFHMN_01635: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 234,323 to 234,619 rimL OKFHMN_01640: ydcH - Uncharacterized protein YdcH, at 234,682 to 234,906 ydcH OKFHMN_01645: opgD - glucan biosynthesis protein OpgD, at 235,046 to 236,665 opgD Position (kb) 234 235Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 233.844 kb on + strand, within ydcKat 234.170 kb on - strandat 234.582 kb on - strand, within rimLat 234.850 kb on - strand, within ydcHat 234.937 kb on + strandat 235.101 kb on + strandat 235.127 kb on - strandat 235.127 kb on - strandat 235.150 kb on - strandat 235.150 kb on - strandat 235.150 kb on - strandat 235.233 kb on + strand, within opgDat 235.234 kb on - strand, within opgD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
233,844 + ydcK OKFHMN_01630 0.75 -1.6
234,170 - +0.3
234,582 - rimL OKFHMN_01635 0.87 -0.7
234,850 - ydcH OKFHMN_01640 0.75 -0.6
234,937 + -3.8
235,101 + +0.4
235,127 - +0.5
235,127 - -0.1
235,150 - +0.0
235,150 - -0.9
235,150 - +1.5
235,233 + opgD OKFHMN_01645 0.12 -1.8
235,234 - opgD OKFHMN_01645 0.12 -0.5

Or see this region's nucleotide sequence