Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01320

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotidesddpA and ddpB are separated by 1 nucleotides OKFHMN_01310: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 165,329 to 166,480 dosP OKFHMN_01315: ddpX - D-alanyl-D-alanine dipeptidase, at 166,738 to 167,319 ddpX OKFHMN_01320: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 167,333 to 168,883 ddpA OKFHMN_01325: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 168,885 to 169,907 ddpB Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1at 166.722 kb on + strandat 166.818 kb on + strand, within ddpXat 166.836 kb on + strand, within ddpXat 166.837 kb on - strand, within ddpXat 166.936 kb on + strand, within ddpXat 167.413 kb on - strandat 167.771 kb on - strand, within ddpAat 168.168 kb on - strand, within ddpAat 168.242 kb on + strand, within ddpAat 168.593 kb on + strand, within ddpAat 168.595 kb on + strand, within ddpAat 168.881 kb on + strandat 168.881 kb on + strandat 168.881 kb on + strandat 169.074 kb on + strand, within ddpBat 169.587 kb on + strand, within ddpBat 169.636 kb on + strand, within ddpBat 169.636 kb on + strand, within ddpBat 169.637 kb on - strand, within ddpB

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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166,722 + +0.6
166,818 + ddpX OKFHMN_01315 0.14 +0.8
166,836 + ddpX OKFHMN_01315 0.17 -1.1
166,837 - ddpX OKFHMN_01315 0.17 -0.4
166,936 + ddpX OKFHMN_01315 0.34 -2.0
167,413 - +0.5
167,771 - ddpA OKFHMN_01320 0.28 -0.7
168,168 - ddpA OKFHMN_01320 0.54 +0.6
168,242 + ddpA OKFHMN_01320 0.59 -1.4
168,593 + ddpA OKFHMN_01320 0.81 +0.2
168,595 + ddpA OKFHMN_01320 0.81 -1.6
168,881 + -2.4
168,881 + -0.1
168,881 + +0.7
169,074 + ddpB OKFHMN_01325 0.18 +0.3
169,587 + ddpB OKFHMN_01325 0.69 -1.4
169,636 + ddpB OKFHMN_01325 0.73 +1.6
169,636 + ddpB OKFHMN_01325 0.73 +1.6
169,637 - ddpB OKFHMN_01325 0.74 +1.3

Or see this region's nucleotide sequence