Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00760

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnudJ and rluE are separated by 9 nucleotidesrluE and icd are separated by 171 nucleotidesicd and int are separated by 113 nucleotides OKFHMN_00750: nudJ - phosphatase NudJ, at 52,002 to 52,463 nudJ OKFHMN_00755: rluE - 23S rRNA pseudouridine(2457) synthase RluE, at 52,473 to 53,126 rluE OKFHMN_00760: icd - NADP-dependent isocitrate dehydrogenase, at 53,298 to 54,548 icd OKFHMN_00765: int - Integrase, at 54,662 to 55,804 int Position (kb) 53 54 55Strain fitness (log2 ratio) -1 0 1at 52.612 kb on - strand, within rluEat 52.641 kb on - strand, within rluEat 52.798 kb on + strand, within rluEat 52.799 kb on - strand, within rluEat 52.799 kb on - strand, within rluEat 52.799 kb on - strand, within rluEat 52.802 kb on - strand, within rluEat 52.909 kb on + strand, within rluEat 53.130 kb on - strandat 55.193 kb on + strand, within int

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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52,612 - rluE OKFHMN_00755 0.21 +0.6
52,641 - rluE OKFHMN_00755 0.26 -0.5
52,798 + rluE OKFHMN_00755 0.50 +0.2
52,799 - rluE OKFHMN_00755 0.50 +1.0
52,799 - rluE OKFHMN_00755 0.50 +0.0
52,799 - rluE OKFHMN_00755 0.50 +1.5
52,802 - rluE OKFHMN_00755 0.50 -0.9
52,909 + rluE OKFHMN_00755 0.67 -0.1
53,130 - +0.4
55,193 + int OKFHMN_00765 0.46 +1.0

Or see this region's nucleotide sequence