Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-IS911 are separated by 212 nucleotides tnp-IS911 and eptO are separated by 178 nucleotides eptO and pulO are separated by 94 nucleotides
OKFHMN_00220: tnp-IS3 - IS3 family transposase, at 47,622 to 48,275
tnp-IS3
OKFHMN_00225: tnp-IS911 - IS3 family IS911 transposase, at 48,488 to 48,793
tnp-IS911
OKFHMN_00230: eptO - GspS family T2SS pilot lipoprotein variant EptO, at 48,972 to 49,370
eptO
OKFHMN_00235: pulO - prepilin peptidase, at 49,465 to 50,298
pulO
Position (kb) 48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 47.530 kb on + strand at 47.584 kb on + strand at 47.588 kb on + strand at 47.597 kb on + strand at 47.722 kb on + strand, within tnp-IS3 at 47.722 kb on + strand, within tnp-IS3 at 47.737 kb on + strand, within tnp-IS3 at 47.746 kb on - strand, within tnp-IS3 at 47.915 kb on + strand, within tnp-IS3 at 47.915 kb on + strand, within tnp-IS3 at 47.915 kb on + strand, within tnp-IS3 at 47.916 kb on - strand, within tnp-IS3 at 47.916 kb on - strand, within tnp-IS3 at 47.916 kb on - strand, within tnp-IS3 at 47.917 kb on + strand, within tnp-IS3 at 47.917 kb on + strand, within tnp-IS3 at 47.947 kb on - strand, within tnp-IS3 at 48.037 kb on - strand, within tnp-IS3 at 48.076 kb on + strand, within tnp-IS3 at 48.103 kb on + strand, within tnp-IS3 at 48.103 kb on + strand, within tnp-IS3 at 48.103 kb on + strand, within tnp-IS3 at 48.104 kb on - strand, within tnp-IS3 at 48.104 kb on - strand, within tnp-IS3 at 48.123 kb on + strand, within tnp-IS3 at 48.201 kb on - strand, within tnp-IS3 at 48.201 kb on - strand, within tnp-IS3 at 48.366 kb on + strand at 48.367 kb on - strand at 48.369 kb on + strand at 48.369 kb on + strand at 48.369 kb on + strand at 48.370 kb on - strand at 48.370 kb on - strand at 48.370 kb on - strand at 48.412 kb on + strand at 48.412 kb on + strand at 48.532 kb on + strand, within tnp-IS911 at 48.546 kb on - strand, within tnp-IS911 at 48.572 kb on + strand, within tnp-IS911 at 48.593 kb on + strand, within tnp-IS911 at 48.726 kb on + strand, within tnp-IS911 at 48.726 kb on + strand, within tnp-IS911 at 48.727 kb on - strand, within tnp-IS911 at 48.727 kb on - strand, within tnp-IS911 at 48.824 kb on + strand at 48.824 kb on + strand at 48.824 kb on + strand at 48.825 kb on - strand at 48.825 kb on - strand at 48.825 kb on - strand at 48.825 kb on - strand at 48.889 kb on + strand at 48.889 kb on + strand at 48.890 kb on - strand at 48.942 kb on + strand at 48.943 kb on - strand at 48.970 kb on + strand at 48.970 kb on + strand at 48.973 kb on + strand at 49.041 kb on + strand, within eptO at 49.042 kb on - strand, within eptO at 49.042 kb on - strand, within eptO at 49.044 kb on - strand, within eptO at 49.045 kb on + strand, within eptO at 49.046 kb on - strand, within eptO at 49.046 kb on - strand, within eptO at 49.046 kb on - strand, within eptO at 49.056 kb on - strand, within eptO at 49.056 kb on - strand, within eptO at 49.078 kb on + strand, within eptO at 49.078 kb on + strand, within eptO at 49.078 kb on + strand, within eptO at 49.079 kb on - strand, within eptO at 49.079 kb on - strand, within eptO at 49.079 kb on - strand, within eptO at 49.079 kb on - strand, within eptO at 49.079 kb on - strand, within eptO at 49.082 kb on + strand, within eptO at 49.082 kb on + strand, within eptO at 49.083 kb on - strand, within eptO at 49.083 kb on - strand, within eptO at 49.083 kb on - strand, within eptO at 49.083 kb on - strand, within eptO at 49.098 kb on - strand, within eptO at 49.101 kb on + strand, within eptO at 49.102 kb on - strand, within eptO at 49.102 kb on - strand, within eptO at 49.102 kb on - strand, within eptO at 49.102 kb on - strand, within eptO at 49.102 kb on - strand, within eptO at 49.103 kb on + strand, within eptO at 49.162 kb on - strand, within eptO at 49.190 kb on + strand, within eptO at 49.196 kb on + strand, within eptO at 49.197 kb on - strand, within eptO at 49.197 kb on - strand, within eptO at 49.280 kb on + strand, within eptO at 49.314 kb on - strand, within eptO at 49.327 kb on - strand, within eptO at 49.329 kb on + strand, within eptO at 49.330 kb on - strand, within eptO at 49.381 kb on + strand at 49.382 kb on - strand at 49.382 kb on - strand at 49.385 kb on + strand at 49.386 kb on - strand at 49.423 kb on - strand at 49.440 kb on + strand at 49.443 kb on + strand at 49.443 kb on + strand at 49.446 kb on + strand at 49.446 kb on + strand at 49.467 kb on - strand at 49.547 kb on - strand at 49.552 kb on - strand, within pulO at 49.561 kb on + strand, within pulO at 49.562 kb on - strand, within pulO at 49.562 kb on - strand, within pulO at 49.568 kb on - strand, within pulO at 49.568 kb on - strand, within pulO at 49.573 kb on + strand, within pulO at 49.600 kb on + strand, within pulO at 49.600 kb on + strand, within pulO at 49.601 kb on - strand, within pulO at 49.648 kb on + strand, within pulO at 49.649 kb on - strand, within pulO at 49.649 kb on - strand, within pulO at 49.707 kb on - strand, within pulO at 49.735 kb on + strand, within pulO at 49.735 kb on + strand, within pulO at 49.760 kb on - strand, within pulO at 49.789 kb on + strand, within pulO
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 47,530 + -0.8 47,584 + -0.4 47,588 + -0.0 47,597 + -0.8 47,722 + tnp-IS3 OKFHMN_00220 0.15 -2.4 47,722 + tnp-IS3 OKFHMN_00220 0.15 +0.1 47,737 + tnp-IS3 OKFHMN_00220 0.18 -3.2 47,746 - tnp-IS3 OKFHMN_00220 0.19 +0.8 47,915 + tnp-IS3 OKFHMN_00220 0.45 +0.3 47,915 + tnp-IS3 OKFHMN_00220 0.45 +0.8 47,915 + tnp-IS3 OKFHMN_00220 0.45 -0.2 47,916 - tnp-IS3 OKFHMN_00220 0.45 -2.6 47,916 - tnp-IS3 OKFHMN_00220 0.45 -0.8 47,916 - tnp-IS3 OKFHMN_00220 0.45 +0.7 47,917 + tnp-IS3 OKFHMN_00220 0.45 -0.3 47,917 + tnp-IS3 OKFHMN_00220 0.45 -0.2 47,947 - tnp-IS3 OKFHMN_00220 0.50 -0.4 48,037 - tnp-IS3 OKFHMN_00220 0.63 +1.2 48,076 + tnp-IS3 OKFHMN_00220 0.69 -0.9 48,103 + tnp-IS3 OKFHMN_00220 0.74 -4.1 48,103 + tnp-IS3 OKFHMN_00220 0.74 +1.5 48,103 + tnp-IS3 OKFHMN_00220 0.74 +1.1 48,104 - tnp-IS3 OKFHMN_00220 0.74 -0.4 48,104 - tnp-IS3 OKFHMN_00220 0.74 -0.0 48,123 + tnp-IS3 OKFHMN_00220 0.77 -1.1 48,201 - tnp-IS3 OKFHMN_00220 0.89 +0.7 48,201 - tnp-IS3 OKFHMN_00220 0.89 -0.6 48,366 + +1.2 48,367 - -0.3 48,369 + -2.6 48,369 + +0.5 48,369 + -1.0 48,370 - +0.9 48,370 - +0.6 48,370 - +1.0 48,412 + -0.1 48,412 + +0.2 48,532 + tnp-IS911 OKFHMN_00225 0.14 -1.2 48,546 - tnp-IS911 OKFHMN_00225 0.19 +0.9 48,572 + tnp-IS911 OKFHMN_00225 0.27 -1.5 48,593 + tnp-IS911 OKFHMN_00225 0.34 +1.6 48,726 + tnp-IS911 OKFHMN_00225 0.78 -0.6 48,726 + tnp-IS911 OKFHMN_00225 0.78 -0.1 48,727 - tnp-IS911 OKFHMN_00225 0.78 +0.0 48,727 - tnp-IS911 OKFHMN_00225 0.78 +1.5 48,824 + +0.1 48,824 + +0.6 48,824 + +0.5 48,825 - -1.7 48,825 - +0.1 48,825 - +1.5 48,825 - +0.5 48,889 + -0.5 48,889 + -2.1 48,890 - +0.3 48,942 + +0.1 48,943 - +1.1 48,970 + +0.5 48,970 + -0.2 48,973 + +0.6 49,041 + eptO OKFHMN_00230 0.17 +1.0 49,042 - eptO OKFHMN_00230 0.18 +0.3 49,042 - eptO OKFHMN_00230 0.18 -0.1 49,044 - eptO OKFHMN_00230 0.18 +0.2 49,045 + eptO OKFHMN_00230 0.18 -0.4 49,046 - eptO OKFHMN_00230 0.19 +0.8 49,046 - eptO OKFHMN_00230 0.19 -0.9 49,046 - eptO OKFHMN_00230 0.19 +0.7 49,056 - eptO OKFHMN_00230 0.21 -1.1 49,056 - eptO OKFHMN_00230 0.21 +0.5 49,078 + eptO OKFHMN_00230 0.27 +0.9 49,078 + eptO OKFHMN_00230 0.27 -0.3 49,078 + eptO OKFHMN_00230 0.27 -0.6 49,079 - eptO OKFHMN_00230 0.27 +0.4 49,079 - eptO OKFHMN_00230 0.27 +1.1 49,079 - eptO OKFHMN_00230 0.27 +0.1 49,079 - eptO OKFHMN_00230 0.27 -3.0 49,079 - eptO OKFHMN_00230 0.27 +1.6 49,082 + eptO OKFHMN_00230 0.28 -1.6 49,082 + eptO OKFHMN_00230 0.28 -0.1 49,083 - eptO OKFHMN_00230 0.28 -0.2 49,083 - eptO OKFHMN_00230 0.28 -3.9 49,083 - eptO OKFHMN_00230 0.28 -0.2 49,083 - eptO OKFHMN_00230 0.28 -0.2 49,098 - eptO OKFHMN_00230 0.32 +0.2 49,101 + eptO OKFHMN_00230 0.32 +0.6 49,102 - eptO OKFHMN_00230 0.33 -0.4 49,102 - eptO OKFHMN_00230 0.33 -0.6 49,102 - eptO OKFHMN_00230 0.33 +0.5 49,102 - eptO OKFHMN_00230 0.33 -0.8 49,102 - eptO OKFHMN_00230 0.33 -0.2 49,103 + eptO OKFHMN_00230 0.33 -0.5 49,162 - eptO OKFHMN_00230 0.48 -0.8 49,190 + eptO OKFHMN_00230 0.55 -2.6 49,196 + eptO OKFHMN_00230 0.56 -0.5 49,197 - eptO OKFHMN_00230 0.56 -0.4 49,197 - eptO OKFHMN_00230 0.56 -0.0 49,280 + eptO OKFHMN_00230 0.77 -0.1 49,314 - eptO OKFHMN_00230 0.86 -2.6 49,327 - eptO OKFHMN_00230 0.89 +0.1 49,329 + eptO OKFHMN_00230 0.89 +0.0 49,330 - eptO OKFHMN_00230 0.90 -0.5 49,381 + +0.2 49,382 - +0.2 49,382 - -1.0 49,385 + +0.1 49,386 - +0.8 49,423 - +0.2 49,440 + +0.7 49,443 + +0.2 49,443 + +0.2 49,446 + +0.7 49,446 + +0.6 49,467 - -0.5 49,547 - +0.3 49,552 - pulO OKFHMN_00235 0.10 -4.2 49,561 + pulO OKFHMN_00235 0.12 +1.8 49,562 - pulO OKFHMN_00235 0.12 +1.3 49,562 - pulO OKFHMN_00235 0.12 +2.2 49,568 - pulO OKFHMN_00235 0.12 +0.6 49,568 - pulO OKFHMN_00235 0.12 -1.0 49,573 + pulO OKFHMN_00235 0.13 +0.1 49,600 + pulO OKFHMN_00235 0.16 +1.0 49,600 + pulO OKFHMN_00235 0.16 -0.1 49,601 - pulO OKFHMN_00235 0.16 +0.6 49,648 + pulO OKFHMN_00235 0.22 +0.8 49,649 - pulO OKFHMN_00235 0.22 -0.8 49,649 - pulO OKFHMN_00235 0.22 -0.6 49,707 - pulO OKFHMN_00235 0.29 -0.2 49,735 + pulO OKFHMN_00235 0.32 +0.9 49,735 + pulO OKFHMN_00235 0.32 -1.9 49,760 - pulO OKFHMN_00235 0.35 -1.0 49,789 + pulO OKFHMN_00235 0.39 -2.2
Or see this region's nucleotide sequence