Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hipB and OKFHMN_28745 are separated by 76 nucleotides OKFHMN_28745 and OKFHMN_28750 overlap by 17 nucleotides OKFHMN_28750 and eCs1768 overlap by 29 nucleotides eCs1768 and OKFHMN_28760 are separated by 31 nucleotides OKFHMN_28760 and OKFHMN_28765 are separated by 186 nucleotides
OKFHMN_28740: hipB - transcriptional regulator, at 5,512,581 to 5,512,988
hipB
OKFHMN_28745: OKFHMN_28745 - transcriptional regulator, at 5,513,065 to 5,513,292
_28745
OKFHMN_28750: OKFHMN_28750 - Putative bacterial toxin ydaT, at 5,513,276 to 5,513,827
_28750
OKFHMN_28755: eCs1768 - DNA-binding protein, at 5,513,799 to 5,514,839
eCs1768
OKFHMN_28760: OKFHMN_28760 - replication protein, at 5,514,871 to 5,515,293
_28760
OKFHMN_28765: OKFHMN_28765 - DNA-binding protein, at 5,515,480 to 5,516,061
_28765
Position (kb) 5513
5514
5515 Strain fitness (log2 ratio) -2
-1
0
1 at 5513.248 kb on - strand, within OKFHMN_28745 at 5513.971 kb on + strand, within eCs1768 at 5514.045 kb on + strand, within eCs1768 at 5514.373 kb on - strand, within eCs1768 at 5515.170 kb on + strand, within OKFHMN_28760 at 5515.731 kb on + strand, within OKFHMN_28765
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,513,248 - OKFHMN_28745 0.80 -0.3 5,513,971 + eCs1768 OKFHMN_28755 0.17 +1.0 5,514,045 + eCs1768 OKFHMN_28755 0.24 -0.9 5,514,373 - eCs1768 OKFHMN_28755 0.55 -2.7 5,515,170 + OKFHMN_28760 0.71 +0.2 5,515,731 + OKFHMN_28765 0.43 +1.0
Or see this region's nucleotide sequence